Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1035 ATGGTAACATCTCCACTTCAGAAGATGTCTAAAACCCTCAAGTTCAATCCCTTTAAGAAGCATTTCCTAATAATGTTCACCATGCTTCTTTCTCTCCCCTTCAATGTTCAATCTCAAGACAGAGAAGAGGAAGAACAGAACCTGCCACAACCCCCTCAAACCGTTCATCCAAGCAAGGGAATCGTGATAGCAGTGCTCGCCGCCATGTTTGCCATTACAACTATCTTACTTTTATATGTGAAGTTCTGTCGAGTCAACGGCCGCCAACTTCTTACCCGAAACTCAAATCTCCAAAACTATCAGGGCCGATCTCGATCAAGTTCAAGAGTTTCTGGTATTGACAAAGAAGTGGTAAAAACCCTCCCTTTCTTCACGTTTTCATCCCTGAAGGGGTTCAAAGATGGCCTAGAATGCACTGTTTGTCTCTCCAAATTTGAGGACTCAGAGACTTTAAGACTGCTTCCCAAGTGCAAGCACGCTTTCCACATGAATTGCATTGACAAGTGGTTTGAAAGCCACTCCACATGCCCTCTCTGTAGACGCAGGGTTGAAGCAGGGGACATAAAGAACCTCAACTACTCCCTAAGCTCAAGGTTCCTCCGAGTTCCTTCAAATCTCACGGAGGATCTAAACCTTGAAATCTTCCTTCAGAGAGAGCCTTCTCATAGAGGGTCATCGAGAAGAGGCTTTAATGACGCGGGGAACTGCAAGAAACAAGAACTGTTTATCGGTGATGGCAGTGCCGGTGGTGGTGCCACAAAGTGGGACACAGATGTTCGTGTGACAAACCTTAAAATAGTTATCTCTGACGTTTTCACGAGGAGCAGGTGGAGTGATCTTAACTCTTCGGACCTGTTGTCGTTGAACAGCGAGATGCTTAATGATGTCAGCAGCAGGAGATTATGTTCCAGTTCTTGGGAATCCACCGAAGACAGCGGAAAGGTTGACGGAACTTGGCGTTTTAAGGAGGAAGAAAAGTGGTTTACGGAAGTGAATCCTGGTGAGAAGAGGTGCATGTCTGAGATTGCCAATGTTCCGAGGTTTGCAGAAATGGGGAAGGAGAATAGGATCGGAGAAAGTGTTTGGTTGCCAATCGCACGAAGAACTATCCAATGGATTGCAAAACAAGAAAGGAATCCGGGTGAATTAGCCTCAAATGTTTGA 1164 0.4553 MVTSPLQKMSKTLKFNPFKKHFLIMFTMLLSLPFNVQSQDREEEEQNLPQPPQTVHPSKGIVIAVLAAMFAITTILLLYVKFCRVNGRQLLTRNSNLQNYQGRSRSSSRVSGIDKEVVKTLPFFTFSSLKGFKDGLECTVCLSKFEDSETLRLLPKCKHAFHMNCIDKWFESHSTCPLCRRRVEAGDIKNLNYSLSSRFLRVPSNLTEDLNLEIFLQREPSHRGSSRRGFNDAGNCKKQELFIGDGSAGGGATKWDTDVRVTNLKIVISDVFTRSRWSDLNSSDLLSLNSEMLNDVSSRRLCSSSWESTEDSGKVDGTWRFKEEEKWFTEVNPGEKRCMSEIANVPRFAEMGKENRIGESVWLPIARRTIQWIAKQERNPGELASNV* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1035 387 CDD RING-H2_EL5_like 137 180 - -
Vra5g1035 387 SUPERFAMILY RING/U-box 118 184 - -
Vra5g1035 387 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 310 383 - -
Vra5g1035 387 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 308 - -
Vra5g1035 387 Pfam Ring finger domain 137 180 IPR001841 -
Vra5g1035 387 SMART ring_2 138 179 IPR001841 -
Vra5g1035 387 PANTHER RING-H2 FINGER PROTEIN ATL4J 30 308 - -
Vra5g1035 387 PANTHER RING-H2 FINGER PROTEIN ATL4J 310 383 - -
Vra5g1035 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 188 IPR013083 -
Vra5g1035 387 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1035 Vra-Chr5 16757691 16758854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1035 47 379 C3H Transcription Factor Family AT2G20030 38.630 2.82e-65 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1035 K10664 - gmx:100816668 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1035 5 16757691 16758854 Vra6g1149 6 18542013 18543508 PCT