Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1028 ATGATAGTTTCAGCGGAGAAGACGATGTCGTTGGAAACCGAGGCCGGGCGAGAGAGCAAGAAGATAAAGCGCATTCGCGACTCGAGCAAGCACCCAGTGTACCGTGGCGTGCGGATGCGGAACTGGGGTAAGTGGGTGTCAGAAATCCGCGAGCCGCGGAAGAAGTCGCGGATATGGCTAGGCACATTCCCGACGCCGGAGATGGCGGCGAGAGCGCACGACGTGGCTGCCCTCAGCATCAAGGGCTCCGCCGCCATTCTGAACTTCCCCCACCTGGCGAACTCCCTCCCACGCCCGGCCTCCCTGGCGGCGCGCGACGTCCAGGCGGCGGCGGCGAAGGCGGCGCACATGGAGCCATCCTCCCTCTCGTCCTTTGTGTCGGCAATGGACCTGTCCTCTGCCTCAGACGAGTTGACTCAGATAGTTGAACTCCCGTCCCTGGAAAGCACCGATGACGGGTGTGTGGAGTTGGAAAAGGAGTTCGTTTTCGTGGACTCGGTGGACACATGGATGTATCAGCCACCACCGTTTGATTTTGATGCGGAACGAGACATTGCCTTGGAGGGTCTGGTGTGGAATTACTAG 585 0.6017 MIVSAEKTMSLETEAGRESKKIKRIRDSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSAAILNFPHLANSLPRPASLAARDVQAAAAKAAHMEPSSLSSFVSAMDLSSASDELTQIVELPSLESTDDGCVELEKEFVFVDSVDTWMYQPPPFDFDAERDIALEGLVWNY* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1028 194 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Vra5g1028 194 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Vra5g1028 194 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 13 176 - -
Vra5g1028 194 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Vra5g1028 194 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Vra5g1028 194 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Vra5g1028 194 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Vra5g1028 194 Pfam AP2 domain 32 82 IPR001471 GO:0003700|GO:0006355
Vra5g1028 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 176 - -
Vra5g1028 194 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1028 Vra-Chr5 16714220 16715573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1028 4 175 AP2-EREBP Transcription Factor Family AT5G11590 64.398 3.66e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra5g1028 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1028 K09286 - gmx:100813069 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1028 5 16714220 16715573 Vra5g1028 5 16714220 16715573 ECH
Vra5g1028 5 16714220 16715573 Vra6g1145 6 18368084 18369807 PCT