Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1020 ATGGAAGCACAAGAGTTCTTCCAGAACACCTTTTACCCTCAATTCCCCTCCGACAACATCACTCCCTCTAACACCAACGCCTCCACCACTGACCACTTCATCGTCGAAGACTTCTTCGACTTCTCAAACAGCGACGAGGCTCCCCTCATCGACGCCACCTTTGACTCTCTCCCCACTGACCACTCTTCCACCCTAACTAACCTCGACACCACCACCAACAACTCCAATTTCTCCGCCACCGATGCTCATTTCTCCGGTGACCTCTCCCTCCCGTATGATGATCTTGCTGAATTGGAGTGGCTGTCGAAATTCGCCGAGGAATCCTTTTCCAGTGAGGATTTACAGAAGCTGCAGCTGATATCCGGTGCCGGAGTGCAAAAGGACACCACATCGGAAACGCGAGACCCGAACCCGGCTCTGTTCAACCCGCAAGTATCGGTTCGGGGGAAGGCGAGGAGTAAGCGGACTCGTGGGCCACCATGCAATTGGTCGTCTCGACTGGTTGTCCTCTCTCCGAACACAATGTCTTCGGAGTCTTCTCATTCAGACAGCGGTAAGAAGGTCGCCCCGCGGAGGAGGGATGTGAGCGAAGGCAGCAGTGAGGGCAGGAAGTGTCTGCATTGCGCAACGGACAAAACGCCACAGTGGCGGACGGGTCCCATGGGTCCTAAAACACTTTGCAATGCATGCGGCGTGAGGTACAAGTCCGGCAGGCTGGTGCCGGAGTACAGGCCCGCCGCAAGCCCAACCTTCGTGCTGACAAAACACTCGAACTCGCACCGGAAAGTGTTGGAGCTGCGACGGCAGAAGGAAATGGTGAGGGTCCAGCAGCAGCAATTGCTCCATCTGCAACATCAGCAGAACATGATGTTCGATGTTCCATCCAACGGTGAGGATTATTTGATCAATCCAATGGGCTCCGACTTCCCACACCTCATCTAA 942 0.5488 MEAQEFFQNTFYPQFPSDNITPSNTNASTTDHFIVEDFFDFSNSDEAPLIDATFDSLPTDHSSTLTNLDTTTNNSNFSATDAHFSGDLSLPYDDLAELEWLSKFAEESFSSEDLQKLQLISGAGVQKDTTSETRDPNPALFNPQVSVRGKARSKRTRGPPCNWSSRLVVLSPNTMSSESSHSDSGKKVAPRRRDVSEGSSEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRVQQQQLLHLQHQQNMMFDVPSNGEDYLINPMGSDFPHLI* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1020 313 MobiDBLite consensus disorder prediction 125 203 - -
Vra5g1020 313 Gene3D - 198 249 IPR013088 GO:0006355|GO:0008270
Vra5g1020 313 MobiDBLite consensus disorder prediction 166 183 - -
Vra5g1020 313 SMART GATA_3 199 249 IPR000679 GO:0006355|GO:0043565
Vra5g1020 313 ProSitePatterns GATA-type zinc finger domain. 205 230 IPR000679 GO:0006355|GO:0043565
Vra5g1020 313 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 201 263 - -
Vra5g1020 313 MobiDBLite consensus disorder prediction 125 140 - -
Vra5g1020 313 PIRSF Txn_fac_GATA_plant 1 294 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vra5g1020 313 Pfam GATA zinc finger 205 238 IPR000679 GO:0006355|GO:0043565
Vra5g1020 313 PANTHER GATA TRANSCRIPTION FACTOR 1 313 - -
Vra5g1020 313 CDD ZnF_GATA 204 251 IPR000679 GO:0006355|GO:0043565
Vra5g1020 313 MobiDBLite consensus disorder prediction 184 203 - -
Vra5g1020 313 ProSiteProfiles GATA-type zinc finger domain profile. 199 235 IPR000679 GO:0006355|GO:0043565
Vra5g1020 313 PANTHER GATA TRANSCRIPTION FACTOR 1 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1020 Vra-Chr5 16626107 16627658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1020 27 313 C2C2-Gata Transcription Factor Family AT4G32890 49.020 1.39e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vra5g1020 GATA 2.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1020 - - pvu:PHAVU_009G110400g 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1020 5 16626107 16627658 Vra5g1020 5 16626107 16627658 ECH