Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1019 ATGATGGCTGTGAGTTCGGCCTGCAAAGATGGGACCAAGGTGGCAATGGACAACGGCAAGTACGTCCGCTATACACCCGAACAGGTGGAAGCACTCGAAAGGCTCTACCATGAATGCCCCAAACCAAGTTCCCTCCGCCGCCAGCAACTCATAAGAGAGTGCCCCATTCTCTCCAACATCGAACCCAAACAGATCAAGGTTTGGTTCCAAAACCGAAGGTGTAGGGAGAAGCAGCGGAAAGAAGCGTCACGGCTGCAAGGTGTGAACAGGAAGCTGACAGCAATGAATAAGTTACTGATGGAGGAAAACGACAGATTGCAGAAGCAGGTGTCACAGCTGGTATATGAAAACAGCTTTTTCCGCCAACAGACTCAGAACGCTACGGTTGCCACGACGGACACGAGCTGTGAGTCGGTGGTGACGAGCGGTCAGCGGCACTTGACGCCCCAGCATCCGCCGAGGGATGCTAGCCCTGCAGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTCGAGTGGGTCCAAATGCCCGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCACGGTTGCCCTGGAGTGGCCGCACGTGCCTGCGGCCTTGTGGGTCTAGAACCTGCCAGGGTTGCCGAAATCCTCAAAGATAGGCTCTCATGGTTTCGTGATTGCCGAACCGTGGACGTTCTAAATGTCATGTCCACTGGAAATGGTGGAACCATTGAGCTACTTTACATGCAGTTGTATGCGCCAACAACTTTAGCACCTGGTCGCGACTTCTGGTTGCTGCGCTACACATCACTTTTGGAGGATGGTAGTCTAGTGGTCTGTGAAAGATCACTCAACAATACTCAGAATGGTCCTGCTATGCCTCCGGTGCAGCATTTTGTTAGAGCTGACATGCTGCCAAGTGGGTATCTGATAAGACCTTGCGAAGGAGGGGGGTCCATCATCCATATTGTTGATCATATGGTTCTAGAGCCATGGAGTGTTCCTGAAGTTTTGCGCCCACTTTATGAGTCATCAATGTTGCTAGCTCAGAGGACTACTATGGCGGCCTTACGTCATTTGAGGCAGATTTCTCAAGAGGTTTCTCAGCCAAGTGTAACAGGATGGGGAAGAAGGCCTGCAGCTTTACGTGCACTGAGTCAGAGATTGAGCAAGGGCTTTAATGAAGCTGTCAATGGCTTTGCCGATGATGGCTGGTCCATGTTAGAAAGTGATGGCATAGATGATGTCACCCTTCTAGTGAATTCCTCACCTAGCAAGATGATGGGAGCTAACCTTGGCTATAACAACAATGGATTTCCTTCTATGAGCAGTTCCGTGCTATGTGCCAAAGCATCCATGTTGCTACAGAATGTTCCTCCAGCAATTCTTCTTAGATTCTTGAGGGAGCACAGGTCAGAATGGGCAGACAGCAGCATTGATGCCTACTCAGCTGCTGCCATTAAAGCCGGTCCCTGTAGCTTGCCAGGGGCCCGACCAGGAGGAGGTTTTGGGGGTCAGGTTATTCTTCCGCTAGCTCACACAATCGAGCATGAAGAGTTCATGGAGGTTATTAAGCTTGAAAACATGGGCTACTATAGGGACGACATGACTATACCTGGTGATGTTTTCCTCTTGCAACTTTGCAGTGGAGTGGACGAGCATGCAGTTGGCACCAGCGCAGAACTTGTTTTTGCTCCAATAGATGCGTCTTTTTCTGATGATGCACCCATTTTACCTTCTGGGTTTCGCATTATACCTCTTGATTCTAGCTCAGATGCTGCTAGTCCAAACCGGACACTTGATCTGGCTTCTGCACTTGAGGTTGGAACCACGGCAAACAAAGCAGCTGGTGATAACTCAGGTCATTCTGGGAGCACAAAATCTGTGATGACAATAGCATTCCAGTTTGCATTTGAAGTTCACCTTCAAGAGAGCATAGCAACCATGGCCAGACAGTATGTTCGTAGTATCATTGCCTCTGTTCAGAGGGTTTCATTAGCACTTTCTCCTTCCCGTTTTGGTTCTCACAATGCATTTCACTTACCACCTGGCACTCCTGAGGCTCAAACACTTGCTCGATGGATCTCTAACAGCTATAGGTTCTATCTAGGGGTAGAACTTCTTAAATGTGAAGGCAGTGAATCCATTCTGAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAGGCATTACCCGTTTTTACGTTTGCAAATCAAGCTGGACTTGACATGCTTGAAACAACTTTGGTTGCACTTCAAGACATAACCCTGGAAAAGATTTTTGATGACAATGGAAAGAAAACCCTGTGCAGCGAGTTCCCCCAGATAATGCAGCAGGGTTTCATGTGTATTCAAGGTGGAATCTGTTTGTCGAGCATGGGTAGACCAGTGTCCTATGAGAGAGCAGTTGCATGGAAAGTATTAAACGAAGAAGAATCTGCTCATTGCATCTGTTTTATGTTCATCAATTGGTCTTTTGTCTGA 2526 0.4822 MMAVSSACKDGTKVAMDNGKYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQGVNRKLTAMNKLLMEENDRLQKQVSQLVYENSFFRQQTQNATVATTDTSCESVVTSGQRHLTPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPARVAEILKDRLSWFRDCRTVDVLNVMSTGNGGTIELLYMQLYAPTTLAPGRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPAMPPVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMVLEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSKGFNEAVNGFADDGWSMLESDGIDDVTLLVNSSPSKMMGANLGYNNNGFPSMSSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAIKAGPCSLPGARPGGGFGGQVILPLAHTIEHEEFMEVIKLENMGYYRDDMTIPGDVFLLQLCSGVDEHAVGTSAELVFAPIDASFSDDAPILPSGFRIIPLDSSSDAASPNRTLDLASALEVGTTANKAAGDNSGHSGSTKSVMTIAFQFAFEVHLQESIATMARQYVRSIIASVQRVSLALSPSRFGSHNAFHLPPGTPEAQTLARWISNSYRFYLGVELLKCEGSESILKSLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCSEFPQIMQQGFMCIQGGICLSSMGRPVSYERAVAWKVLNEEESAHCICFMFINWSFV* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1019 841 Pfam MEKHLA domain 700 840 IPR013978 -
Vra5g1019 841 Pfam Homeodomain 20 78 IPR001356 GO:0003677
Vra5g1019 841 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677
Vra5g1019 841 SUPERFAMILY Homeodomain-like 19 82 IPR009057 -
Vra5g1019 841 SUPERFAMILY Bet v1-like 163 374 - -
Vra5g1019 841 Gene3D - 198 379 IPR023393 -
Vra5g1019 841 PANTHER CLASS III HD-ZIP PROTEIN CNA1 5 841 - -
Vra5g1019 841 CDD START_ArGLABRA2_like 158 373 - -
Vra5g1019 841 CDD homeodomain 20 80 IPR001356 GO:0003677
Vra5g1019 841 SMART HOX_1 17 83 IPR001356 GO:0003677
Vra5g1019 841 SMART START_1 163 373 IPR002913 GO:0008289
Vra5g1019 841 Gene3D - 12 85 - -
Vra5g1019 841 Pfam START domain 164 372 IPR002913 GO:0008289
Vra5g1019 841 ProSiteProfiles START domain profile. 154 382 IPR002913 GO:0008289
Vra5g1019 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 5 841 IPR044830 GO:0003700
Vra5g1019 841 Coils Coil 89 116 - -
Vra5g1019 841 CDD bZIP 72 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1019 Vra-Chr5 16602171 16607856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1019 16 841 Homeobox Transcription Factor Family AT4G32880 80.987 0.0 1400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra5g1019 START 4.4e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1019 K09338 - gmx:100815727 1622.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1019 5 16602171 16607856 Vra5g1019 5 16602171 16607856 ECH