Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1018 ATGGCCAAAGGATCTTCAGAGACAAAATCCATGACATTTATATGCCTCTTCTTGTTCATGCTCAACTTCCACTCATCCCACGGAGATCCAAAAGAGGTTCAGCTTTTATTATCCTTCAAAGCTTCCATCGATGACCCGCTTCACTTTCTTTCCAACTGGGAAACTTCCTCTGCCACTTTATGCAGGTGGCATGGCATCACCTGCGACAACAACGTTAACTCTTCCCACGTTAACGCTGTGGTGCTCTCGGGAAAAAACATGACCGGCCAGGTCTCCTCTATTTTTCAACTTCCATACGTCGCAAACATCGACCTTTCCAATAATCAGTTTGTTGGGGAAATCACTTTTAACTACTCTTTCAATTCTCTGTCTCTACTTCGTTACCTTAACCTCAGCAACAACAACTTCACTGGTTCTTTGCCTCAACCATTGTTTTCCGTGCTTTTCTCAAACCTTGAAACTCTGGATCTCTCCAACAACATGTTTTCAGGGAACATACCTCACCAAATTGGATTGCTTTCCAGCCTAAGGTATCTTGATCTTGGAGGAAACCTTTTGGTAGGAAAGATTCCGAATTCCGTCACCAACATGACCACTTTGCAGTACCTTACGTTGGCTTCAAACCAGTTAGTGGATAAGATACCAGAAGAAATTGGCCAGATGAAGAGCTTGAAGTGGATTTACTTGGGCTACAACAACCTTTCAGGTGAGATACCAATTAGCATTGGAGAGTTACTCTCTTTGAATCATCTCGACCTTGTCTACAACAACCTCACTGGACCTATTCCTCAATCTCTCGGACACCTCACTGAGCTTCAATATCTCTTTCTTTATCAAAACAAACTGAGTGGTCCAATTCCCCAATCCATTTTCGAACTGAAAAGGCTCATTTCACTCGATCTAAGTGATAATTCTCTTTCGGGTTTGATTTCTGAGCGCGTGGTTCAGCTTCAGAGGCTGGAGATTCTCCACCTTTTCTCAAACAATTTCACTGGGAAGATTCCAAAGGGTGTTGCATTTTTGCCTCGGCTCCAGGTCCTTCAGCTATGGTCAAATGGATTAATAGGTGAGATTCCTGAGGAGCTTGGAAAACATAGCAACCTCACTGTGTTGGACCTCTCCACCAACAACCTCGCAGGGAAGATTCCAGATAACATATGCCACTCAGGTAGTCTTTTCAAGCTGATCCTCTTCTCCAACTATTTCGAAGGAGAAATCCCAAAGAGCTTAACCTCTTGCAGAAGCCTTCGCCGAGTGAGACTACAAAACAACAAGTTCTCGGGGAAATTACCACCGGAATTAACCACACTGCCTCAGGTATACTTCTTGGATATCTCTGGAAACCAACTTTCTGGAAGGATCAATGACAGAAAATGGAACATGCCGTCGCTTCAAATGCTCAGTTTGGCCAACAACAACTTCTCAGGAGAACTTCCTACCTCTTTCGGGACACAAATTCTGGAGGACCTGGACTTATCAAACAACCAATTATCAGGTTCTATTCATCTAGATTATAAAAGCCTATCAGAGCTGGTGGAATTGAAGCTCAGCTATAACAAACTCTTTGGTAACATTCCAGAAGAAATTTGCTCGTGCAAGAAGCTTGTGGCCTTAGATTTGAGTCACAACCAGCTCAGTGGTGAAATACCGATGAAATTCTCGGAGATGCCGGTTCTCGGCCTCCTTGACCTGTCAGAAAACCAATTCTCCGGCGAGATTCCGCAGGATTTGGGAAGCACCGAGTCTCTCGTTCAGATCAACATTTCACACAACCATTTTCGTGGAAGTTTACCTTCTACCGGTGCTTTCCTCGCCATCAACGCCAGTGCAGTCACCGGCAACAACCTTTGTGACCGTGATGATGACTCTTCAAGCGGGTTGCCACTGTGCAAAAGCAATAACCAGAACCCAACTTGGCTCTTCATCATGCTGTGTTTTCTACTAACACTGGTTGCGTTCGCAGCAGCTTCTTTACTCGTCTTTTATGTTAAGAGAAAGAGCTTCTCGGAAGTGCGAAAAGTGGAAAACCAAGACGGAACCTGGGAAGTGCAGTTCTTTTGTGCCAAAGCAGCGAGGTTGATGAAGGTAGATAACGTTTTCTCTACGGTTAAAGAGGGAAGAGTTGTGTCCAAAGGAAGGAACTGGGTTTCCTACGAAGGGAAGTGCATGGAGAACGGCATGCAGTTCACGGTGATGGAAATCAGTGAGTTGAATTCTCTTTCGACGAGTATGTGGGAAGAAACAGTGAAGGGTGGAAAGGTTCGTCACCCCAATATCTTCAATCTTGTTGGGACGTGTAGGTGTGGGAAGAGAGGATACTTGGTGTACGAACACGGGGAGGGTAAGAAACTAAGCGAGATTGTGAACAGTTTGAGTTGGAAACAGCGTTGCAAGATTGCTGTTGGCGTTGCAAAAGCGATTAAATTCCTGCATTCTCACGCTTCATCCATGGTTTTGGTGGGAGAGGTTGCAAGGGAGACAGTTAGGGTCGACATGAAAGGTGTCCCTCGCCTTAAGGTCACCCCTCCCATAATGACATGTTTGGATGTCAAGGGTATCACTTCTTCGACATACCTTACCCAAGAGGCAAGAGAAAGGAAAAATGTGACAGAGAAGAGTGAGATATATGGGTTGGGAGTTATGCTGATCGAACTATTGACGGGAAGGAGCGGCATAGACATAGAAGCAGGAAATGGCATGCACAAGAGTATTGTGGAGTGGGCCCGATATTGCTACTCTGATTGTCATGTTGACACGTGGATTGATCCTGTGATGAAAGGTGGAGATGCATTGAGGTATGAGAAGGACATGGTTGAGATGATGAATCTAGCGCTGCACTGTACCACAACCGATCCGACTGCAAGGCCATGCGCAAGAGATGTAGTGAAAGCCCTAGAGAGTTTTCAGAGAACTAGTTTTTGTTGA 2925 0.4509 MAKGSSETKSMTFICLFLFMLNFHSSHGDPKEVQLLLSFKASIDDPLHFLSNWETSSATLCRWHGITCDNNVNSSHVNAVVLSGKNMTGQVSSIFQLPYVANIDLSNNQFVGEITFNYSFNSLSLLRYLNLSNNNFTGSLPQPLFSVLFSNLETLDLSNNMFSGNIPHQIGLLSSLRYLDLGGNLLVGKIPNSVTNMTTLQYLTLASNQLVDKIPEEIGQMKSLKWIYLGYNNLSGEIPISIGELLSLNHLDLVYNNLTGPIPQSLGHLTELQYLFLYQNKLSGPIPQSIFELKRLISLDLSDNSLSGLISERVVQLQRLEILHLFSNNFTGKIPKGVAFLPRLQVLQLWSNGLIGEIPEELGKHSNLTVLDLSTNNLAGKIPDNICHSGSLFKLILFSNYFEGEIPKSLTSCRSLRRVRLQNNKFSGKLPPELTTLPQVYFLDISGNQLSGRINDRKWNMPSLQMLSLANNNFSGELPTSFGTQILEDLDLSNNQLSGSIHLDYKSLSELVELKLSYNKLFGNIPEEICSCKKLVALDLSHNQLSGEIPMKFSEMPVLGLLDLSENQFSGEIPQDLGSTESLVQINISHNHFRGSLPSTGAFLAINASAVTGNNLCDRDDDSSSGLPLCKSNNQNPTWLFIMLCFLLTLVAFAAASLLVFYVKRKSFSEVRKVENQDGTWEVQFFCAKAARLMKVDNVFSTVKEGRVVSKGRNWVSYEGKCMENGMQFTVMEISELNSLSTSMWEETVKGGKVRHPNIFNLVGTCRCGKRGYLVYEHGEGKKLSEIVNSLSWKQRCKIAVGVAKAIKFLHSHASSMVLVGEVARETVRVDMKGVPRLKVTPPIMTCLDVKGITSSTYLTQEARERKNVTEKSEIYGLGVMLIELLTGRSGIDIEAGNGMHKSIVEWARYCYSDCHVDTWIDPVMKGGDALRYEKDMVEMMNLALHCTTTDPTARPCARDVVKALESFQRTSFC* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1018 974 SMART serkin_6 661 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1018 974 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Vra5g1018 974 Pfam Protein tyrosine and serine/threonine kinase 740 965 IPR001245 GO:0004672|GO:0006468
Vra5g1018 974 PRINTS Leucine-rich repeat signature 487 500 - -
Vra5g1018 974 PRINTS Leucine-rich repeat signature 508 521 - -
Vra5g1018 974 Gene3D Ribonuclease Inhibitor 29 190 IPR032675 -
Vra5g1018 974 SUPERFAMILY Protein kinase-like (PK-like) 704 970 IPR011009 -
Vra5g1018 974 Pfam Leucine Rich repeat 531 548 IPR001611 GO:0005515
Vra5g1018 974 ProSiteProfiles Protein kinase domain profile. 657 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1018 974 Gene3D Ribonuclease Inhibitor 191 291 IPR032675 -
Vra5g1018 974 Pfam Leucine rich repeat 126 186 IPR001611 GO:0005515
Vra5g1018 974 Pfam Leucine rich repeat 342 401 IPR001611 GO:0005515
Vra5g1018 974 Gene3D Phosphorylase Kinase; domain 1 663 778 - -
Vra5g1018 974 Gene3D Ribonuclease Inhibitor 292 624 IPR032675 -
Vra5g1018 974 SMART LRR_typ_2 269 293 IPR003591 -
Vra5g1018 974 SMART LRR_typ_2 461 484 IPR003591 -
Vra5g1018 974 SMART LRR_typ_2 149 173 IPR003591 -
Vra5g1018 974 SMART LRR_typ_2 556 580 IPR003591 -
Vra5g1018 974 SMART LRR_typ_2 197 221 IPR003591 -
Vra5g1018 974 SMART LRR_typ_2 341 365 IPR003591 -
Vra5g1018 974 SMART LRR_typ_2 508 532 IPR003591 -
Vra5g1018 974 SMART LRR_typ_2 123 147 IPR003591 -
Vra5g1018 974 SMART LRR_typ_2 366 389 IPR003591 -
Vra5g1018 974 SUPERFAMILY L domain-like 43 359 - -
Vra5g1018 974 PANTHER - 6 972 - -
Vra5g1018 974 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 972 - -
Vra5g1018 974 SUPERFAMILY L domain-like 302 598 - -
Vra5g1018 974 ProSiteProfiles Leucine-rich repeat profile. 151 173 IPR001611 GO:0005515
Vra5g1018 974 Gene3D Transferase(Phosphotransferase) domain 1 779 973 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1018 Vra-Chr5 16585795 16589892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1018 16 966 Receptor kinase-like Gene Family AT2G25790 51.506 0.0 890
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Singleton Vra5g1018 PK_Tyr_Ser-Thr 3.9e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1018 - - gmx:100777118 1598.56