Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1009 ATGCCTGAGCTGCGTACCCGAACTCGAAGAAACCGACTCGTAGACAACGCAAACGTTATCCCGATCATTCAGCCAGCCTCGCCGGCGACCGCCAGAGCTCGACGGAGGAAGACATCCGCCGCGCCTGCCCGAACGCGGAGGAATCGGAGTCAGAACAATGCGATCGCCGCCGCCGATGAAGTCGTGAACGATTACGCTGGTGCTGCTTGCGGAGCCAGAAATAGAAATAGAAATTTAAAATACAAGCTAGGAGAGAAAGAGAATAACAATAATAAAATTTCGGCTAGGGTTTTTGAAGAGGAAGACATGGATGAAGACGATAGTCGTGGCCGTAGCGCAGATAAGGCTCCGGGAGCTGAAGATGAAGGCAGCACTGCTCCTCTTCCGGAGAAGGTTCAAGTTGGTGGTTCTCCTTTGTATAGAATTGAGAGAAAACTTGGGAAGGGAGGATTTGGGCAAGTCTATGTTGGTCGGCGGATAGGAGTTACGAATTCTAGCGAACGGACTGGTGCCGGTGCTGTTGAGGTAGCTTTAAAATTTGAACATAGAAGCAGCAAGGGGTGCAACTATGGACCGCCATACGAGTGGCAGGTTTACAATGCATTAGGCGGTAGTCATGGTGTTCCACGAGTACATTTCAAGGGACGGCAAGGTGACTACTATATTATGGTAATGGATATGCTTGGTCCCAGTCTGTGGGATGTTTGGAATAACAACTCTCACACCATGTCTACTGAAATGGTAGCATGTATTGCAATTGAGGCTATCTCCATATTAGAGAAGATGCATTCTAGAGGATATGTGCATGGTGATGTAAAGCCTGAGAATTTTTTGCTTGGACCCCCTGGAACTCCAGATGAAAAGAAGTTGTTTCTTGTTGATCTTGGGTTAGCAACTCGGTGGCGTGATAATTCGACTGGCCTTCATGTTGAATACGATCAGCGTCCAGATGTTTTTAGGGGCACAGTTCGTTATGCTAGTGTGCATGCTCATCTTGGTAGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTATACTCTTGTGTTCCTTCTTCGGGGTCGGCTTCCCTGGCAAGGATATCAGGGGGAAAATAAAGGGTTTCTTGTCTGCAAAAAAAAGATGGCCACCTCTCCAGAAACATTGTGTTGCTTTTGTCCTCAACCTTTCCGGCAGTTTGTTGAATATGTAGTGAATTTGAAGTTTGATGAAGAACCAAATTATGCAAAATATATATCCCTCTTTGATGGAATCGTGGGCCCAAATCCAGATATCAGGCCAATAAACACCGAGGGTGCTCAGAAGCTTATATGTCAGGTTGGCCATAAGAGGGGGCGTTTGACCATGGAAGATGATGACGATGAACAGCCTAAAAAAAAGGTTCGAATGGGAATGCCTGCTACACAATGGATTAGTGTTTACAATGCTCGTCGACCAATGAAGCAAAGGTATCATTATAATGTCGCCGATGTGCGGTTAGCCCAACACATTGATAAAGGGAATGAAGATGGTTTATTTATCAGCAGTGTGGCTTCTTGTACTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACTGCACAAGTTTATGAACTCTCTTCCTGCTTTCTTCATAAGGAATGGATTATGGAACAATGGGAAAATAATTATTACATTAGTGCCATAGCCGGAGCTCATAATGGATGCTCATTGGTTGTAATGTCTAAAGGTACCCAGTACGTACAGCAATCCTATAAAGTCAGTGATTCGTTTCCATTTAAGTGGATCAACAAAAAATGGAGAGAAGGATTTTATGTAACTGCTATGGCCACTGCTGGCACTAGATGGGCAATTGTTATGTCACGTGGGGCTGGTTATTCTGATCAGGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGGGATAATGGTTATCGCATCACCTCAACTGCTGCAACACGGGACCAGGCTGCTTTTGTTCTTAGTGTCCCAAGAAGAAAACCAACTGATGAAACTCAGGAGACACTCCGAACATCTGCTTTTCCTAGCGCTCATGTTAAGGATAAATGGGCAAAGAATCTCTATATTGCATCTATTTGCTATGGGAGAACAGTGTCATAA 2124 0.4496 MPELRTRTRRNRLVDNANVIPIIQPASPATARARRRKTSAAPARTRRNRSQNNAIAAADEVVNDYAGAACGARNRNRNLKYKLGEKENNNNKISARVFEEEDMDEDDSRGRSADKAPGAEDEGSTAPLPEKVQVGGSPLYRIERKLGKGGFGQVYVGRRIGVTNSSERTGAGAVEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHFKGRQGDYYIMVMDMLGPSLWDVWNNNSHTMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATRWRDNSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPETLCCFCPQPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKLICQVGHKRGRLTMEDDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADVRLAQHIDKGNEDGLFISSVASCTNLWALIMDAGTGFTAQVYELSSCFLHKEWIMEQWENNYYISAIAGAHNGCSLVVMSKGTQYVQQSYKVSDSFPFKWINKKWREGFYVTAMATAGTRWAIVMSRGAGYSDQVVELDFLYPSEGIHRRWDNGYRITSTAATRDQAAFVLSVPRRKPTDETQETLRTSAFPSAHVKDKWAKNLYIASICYGRTVS* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1009 707 MobiDBLite consensus disorder prediction 27 50 - -
Vra5g1009 707 Pfam Protein kinase domain 140 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1009 707 PANTHER CASEIN KINASE-RELATED 88 681 - -
Vra5g1009 707 ProSiteProfiles Protein kinase domain profile. 140 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1009 707 PANTHER - 88 681 - -
Vra5g1009 707 SUPERFAMILY Protein kinase-like (PK-like) 140 420 IPR011009 -
Vra5g1009 707 Gene3D Transferase(Phosphotransferase) domain 1 108 461 - -
Vra5g1009 707 ProSitePatterns Protein kinases ATP-binding region signature. 146 179 IPR017441 GO:0005524
Vra5g1009 707 MobiDBLite consensus disorder prediction 92 134 - -
Vra5g1009 707 CDD STKc_CK1 140 416 - -
Vra5g1009 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Vra5g1009 707 SMART serkin_6 140 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1009 Vra-Chr5 16518106 16522920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1009 235 416 MAP Kinase Kinase Kinase AT5G50180 25.000 1.66e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vra5g1009 Pkinase 1.8e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1009 - - gmx:100779382 1236.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1009 5 16518106 16522920 Vra5g1009 5 16518106 16522920 ECH