Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1001 ATGTCCAAAGTGCCCCTCTTTATTTCATTTCATTTCTTTCTGTTATTCAGCGTCGCTGTACCCTCTCGGGTAATTTCAGAAACTGAACAAACAATTTTACTCACTCTCAAACGTGAACTGGGAGACCCACCGTCGCTCCGATCATGGAAACCGTCTCCTTCTGCGCCGTGCGAGTGGGCGGAGATTGGATGCAGCAGCGGCGGCGCCGTCACGAAGCTAGTCCTCTCCAGCAAAGGCATCACCACCACCAAGAGCCTTCCTTCCACAATCTGCAACCTCAAACACCTACTTGAGCTTAACCTCTTCAACAACTCCATTTCCGGCGAGTTTCCGACAACCTTGTACGAATGCTCCAACCTCCGGTACCTCAACCTGTCGCAGAACTACCTCGCTGGAGCGATCCCCGCCGACGTGGACCGCCTCAAAACCCTCACTTTCCTGGACCTCAGCGCCAACTCCTTCTCCGGAGAGATCCCGGCCGCGATTGGGAACCTGTCAGAACTGCAAACGCTGTATCTGTCCGCAAACAACTTCGAGGGAACTGTCCCCAGGGAAATCGGAAACTTGTTGAACCTCGAATTTTTGGGTTTGGCTTATAATCTCAAACTCGCGCCGTGGGAGTTCCCGTTGGAGTTTAGGAAATTAAAAAATTTGAGGTCTATGTATATGCCGCAGTGTAACTTGATCGGAGAGATTCCAGAATATTTCGGGGATATTTTCACGAACCTCGAACGGTTGGATTTGGGGAAGAACAAGTTATCAGGGAGCATTCCGAGGAATTTGTTCTCGCTGAGGAAGTTGAGGTTCTTGTACCTGTTCAGTAACAGATTGTCGGGTGTGATTCCTAGTACTACGATGCAGTGTTTGGAATTAATCGAGCTTGATTTCGCGAAGAATAATTTGACGGGTTCCATACCCCCAGAGTTTGGAAAGTTAAAGAACTTGAGTACCTTGCACTTGTACGAAAATCACTTGGTCGGTGAGATTCCCGTAAGTTTAAGCCAAATTCCTAGTCTCGTCTATTTCAGGGTTTTCAGCAATAACTTGAGTGGAACACTGCCTCCAGAACTAGGCTTGCATTCCAAGCTTACAGTGTTTGAGGTTTCTGAGAACCAGCTCAGTGGTGGGTTGCCGGAACATTTATGTGCAGGTGGTGCCCTTATTGGTGTGGTTGCATTTTCCAACAATTTTAGTGGGGTTTTGCCTGAGTGGATTGGGAATTGTCCTTCTCTAGCCACGGTTCAGCTTTATAATAACAAGTTTTCGGGTGAGGTTCCTTTGGGTTTGTGGACTATGAATAACCTTTCGTCCTTGATTTTGAGCAACAACTCTTTTTCTGGGTCTCTTCCGAGTCAAGTGTTTTGGAATATGACGAGGATTGAAATCGCCAACAACAACTTCTCGGGTGGGATATCTGTTGGGATTACTTCAGCTAAAAATCTGATGTTTCTTGATGCCAGAAACAACATGCTTTTGGGTGAAATTCCAAGGGAATTGACTCAACTTTCACAGCTTACAGCTCTCATGCTGGATGGTAACCAACTTTCGGGTGCACTTCCATCTGAGATTATTTCGTGGCAATCACTGAACATTTTGACACTATCAGGAAACAAACTTTCTGGCCAGATTCCCACGGCTATTACTGCTCTTCCCCGCCTGGCTTACCTGGACTTGTCTCAAAACGACATATCAGGTGAAATACCTCCTCAGTTTGATAGGTTGCGGTTTGTTTTCCTCAACTTGTCCTCCAACCGGCTATCTGGGAAAATTCCTGATGAGTTCAATAACCTCGCATTTGAAAACAGTTTCTTGAACAATCCTCATCTATGTGCTTACAATCCAAACGTCCACCTTGACAACTGCTTGACCAAAACCGCGTCAGCGGCACCACAGTCGAGCAATTCGTCTTCGAAATCAGTGGCCCTGGTTCTGGCTGCCACTGCGGTTGTGTTAGCGGCAATAGCTTCCTTGGTCTACTATATGTTGAAAACGCAATGGGGCAAAAAGCACTGCGGGCATAAAAATAAGGTTGCAACGTGGAGGCTCACTTCATTCCAGAAGCTTGATCTCACGGAAATAAACTTCCTCTCGAGTTTGACAGACAATAACCTCATAGGGAGTGGAGGGTTTGGGAAAGTTTACCGGATTGCTTCAAATCGTCCAGGTGAGTATGTTGCGGTGAAGCGGATCTGGAATCGCGAGAATGTGGATGACAAGTTGGAGAAAGAGTTCCAGACTGAGGTTGAGATCCTGGGCAACATTCGCCACTCGAATATAGTGAAGCTTTTGTGCTGCTATGCAAGTGAGAATTCCAAACTTCTTGTTTATGAATACATGGAAAATCAGAGCCTGGACAAATGGCTTCATGCAGAGGAAAAAACATCGCCTCCTGGGTTGAGTTGGCCAACGAGGTTGAATATTGCCATTGGGACTGCACAAGGCCTGTGTTACATGCACCATGAATGCTCACCCCCCGTCATCCACCGAGACGTCAAATCTAGCAATATACTGTTGGACTCAGAGTTCAGAGCTAAAATAGCAGATTTTGGGCTCGCCAAGATGTTGGCAAAGCCCGGTGAACTAAACACCATGTCTGCACTAGCAGGCTCTTTTGGCTACATTCCACCAGAATATGCTTACTCAACTAAGATTAACGAGAAAGTTGATGTTTATAGCTTTGGTGTTGTGCTCTTAGAGCTTGTTACGGGAAGGAAGCCTAATATAAGCGGCGAGCGTGCATGCAGCTTAGTTGAATGGGCGTGGGAGCATTTTAATGAAGCCAAGAGCCTTACTGATGCATTCGATGAGAATGTCAAAGAACCACGTTATGCGCAAGAGATGGCTAATGTCTTCAAATTGGGCCTCCTTTGCACAAGCTCCTTGCCCTCAACCAGACCTTCCACGAAGGAGATTTTGCAAGTACTTCGGTGTTGTCATTCAGGTTCTACACGTAGAAAAATGGGAAATGAGTTTGATATCGCTCCTCTACTTGGGGACACAAGGTACGTTTGTAGTTACAAGGAGAGTAATGCTGCAACCAATAACTCATCTTGGTGA 3057 0.4642 MSKVPLFISFHFFLLFSVAVPSRVISETEQTILLTLKRELGDPPSLRSWKPSPSAPCEWAEIGCSSGGAVTKLVLSSKGITTTKSLPSTICNLKHLLELNLFNNSISGEFPTTLYECSNLRYLNLSQNYLAGAIPADVDRLKTLTFLDLSANSFSGEIPAAIGNLSELQTLYLSANNFEGTVPREIGNLLNLEFLGLAYNLKLAPWEFPLEFRKLKNLRSMYMPQCNLIGEIPEYFGDIFTNLERLDLGKNKLSGSIPRNLFSLRKLRFLYLFSNRLSGVIPSTTMQCLELIELDFAKNNLTGSIPPEFGKLKNLSTLHLYENHLVGEIPVSLSQIPSLVYFRVFSNNLSGTLPPELGLHSKLTVFEVSENQLSGGLPEHLCAGGALIGVVAFSNNFSGVLPEWIGNCPSLATVQLYNNKFSGEVPLGLWTMNNLSSLILSNNSFSGSLPSQVFWNMTRIEIANNNFSGGISVGITSAKNLMFLDARNNMLLGEIPRELTQLSQLTALMLDGNQLSGALPSEIISWQSLNILTLSGNKLSGQIPTAITALPRLAYLDLSQNDISGEIPPQFDRLRFVFLNLSSNRLSGKIPDEFNNLAFENSFLNNPHLCAYNPNVHLDNCLTKTASAAPQSSNSSSKSVALVLAATAVVLAAIASLVYYMLKTQWGKKHCGHKNKVATWRLTSFQKLDLTEINFLSSLTDNNLIGSGGFGKVYRIASNRPGEYVAVKRIWNRENVDDKLEKEFQTEVEILGNIRHSNIVKLLCCYASENSKLLVYEYMENQSLDKWLHAEEKTSPPGLSWPTRLNIAIGTAQGLCYMHHECSPPVIHRDVKSSNILLDSEFRAKIADFGLAKMLAKPGELNTMSALAGSFGYIPPEYAYSTKINEKVDVYSFGVVLLELVTGRKPNISGERACSLVEWAWEHFNEAKSLTDAFDENVKEPRYAQEMANVFKLGLLCTSSLPSTRPSTKEILQVLRCCHSGSTRRKMGNEFDIAPLLGDTRYVCSYKESNAATNNSSW* 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1001 1018 SUPERFAMILY Protein kinase-like (PK-like) 693 975 IPR011009 -
Vra5g1001 1018 SMART LRR_typ_2 165 189 IPR003591 -
Vra5g1001 1018 SMART LRR_typ_2 432 456 IPR003591 -
Vra5g1001 1018 SMART LRR_typ_2 312 336 IPR003591 -
Vra5g1001 1018 SMART LRR_typ_2 93 117 IPR003591 -
Vra5g1001 1018 SMART LRR_typ_2 502 526 IPR003591 -
Vra5g1001 1018 SMART LRR_typ_2 240 264 IPR003591 -
Vra5g1001 1018 SMART LRR_typ_2 550 573 IPR003591 -
Vra5g1001 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 826 838 IPR008271 GO:0004672|GO:0006468
Vra5g1001 1018 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Vra5g1001 1018 ProSitePatterns Protein kinases ATP-binding region signature. 705 728 IPR017441 GO:0005524
Vra5g1001 1018 Gene3D Ribonuclease Inhibitor 25 205 IPR032675 -
Vra5g1001 1018 CDD STKc_IRAK 705 975 - -
Vra5g1001 1018 SUPERFAMILY L domain-like 291 599 - -
Vra5g1001 1018 SMART serkin_6 699 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1001 1018 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 15 991 - -
Vra5g1001 1018 Gene3D Transferase(Phosphotransferase) domain 1 779 994 - -
Vra5g1001 1018 Gene3D Phosphorylase Kinase; domain 1 679 778 - -
Vra5g1001 1018 Pfam Protein kinase domain 701 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1001 1018 Gene3D Ribonuclease Inhibitor 350 623 IPR032675 -
Vra5g1001 1018 Gene3D Ribonuclease Inhibitor 206 349 IPR032675 -
Vra5g1001 1018 Pfam Leucine rich repeat 226 277 IPR001611 GO:0005515
Vra5g1001 1018 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 15 991 - -
Vra5g1001 1018 ProSiteProfiles Protein kinase domain profile. 699 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g1001 1018 SUPERFAMILY L domain-like 32 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1001 Vra-Chr5 16438992 16442346 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1001 18 997 Receptor kinase-like Gene Family AT5G25930 51.623 0.0 960
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra5g1001 Pkinase 2.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1001 K00924 - gmx:100782466 1555.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1001 5 16438992 16442346 Vra5g1001 5 16438992 16442346 ECH