Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0998 ATGGCCATCGCAACAGAGACTCAGCCTCAACAACACAAGGATTCTTTCGAGGTGTCGGGTTCAGCTGCGGAGAGGAGGTGGACGCTGAACGATTTCGAGGTTGGAAAGCCTCTTGGAAGGGGGAAATTCGGCCACGTCTATTTGGCAAGAGAGAAGAGTAGTAATCATATTGTTGCTTTGAAAGTACTCTTTAAGAGCCAATTGCAGCAATCCCAAGTTGTGCATCAACTTCGGCGAGAAGTTGAGATTCAAAGTCATCTCCGACATCCCCACATCTTGCGCCTCTATGGATACTTTTATGACCAGAAAAGAGTGTATTTGATTTTAGAGTATGCACCCAAAGGTGAACTTTACAAGGAATTGCAAAAATGCAAGTATTTCAGTGAAAGGCGTGCAGCTACTTATGTTGCGTCATTGGCTCGGGCCCTAATATATTGCCATGGAAAACACGTAATCCACAGGGATATTAAACCAGAAAACCTTCTTGTTGGTGCACAGGGTGAGCTAAAAATAGCGGACTTTGGGTGGTCAGTGCACACATTTAATCGCAGGCGGACAATGTGTGGCACACTGGATTACCTTCCTCCCGAGATGGTGGAGAGTGTAGAACATGATGCGAGTGTGGATATATGGAGCCTTGGTGTGCTGTGTTATGAGTTTCTTTATGGGGTCCCTCCCTTTGAGGCTAAAGAACACTCAGATACTTACAGGAGGATAGTACACGTGGATCTTAAGTTCCCTCCTAAACCAATTGTATCCTCTGGTGCAAAGGATCTTATCAGTCAGATGCTTGTCAAGGATTCCTCGCAACGGTTACCATTGCACAAACTCCTTGATCACCCTTGGATTGTTCAGAATGCAGAGCCTTCTGGTGTATATAGGGGCTAG 888 0.4572 MAIATETQPQQHKDSFEVSGSAAERRWTLNDFEVGKPLGRGKFGHVYLAREKSSNHIVALKVLFKSQLQQSQVVHQLRREVEIQSHLRHPHILRLYGYFYDQKRVYLILEYAPKGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLVGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIVHVDLKFPPKPIVSSGAKDLISQMLVKDSSQRLPLHKLLDHPWIVQNAEPSGVYRG* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0998 295 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524
Vra5g0998 295 PANTHER SERINE/THREONINE-PROTEIN KINASE AURORA-1 1 295 - -
Vra5g0998 295 SUPERFAMILY Protein kinase-like (PK-like) 20 287 IPR011009 -
Vra5g0998 295 ProSiteProfiles Protein kinase domain profile. 32 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0998 295 PIRSF ILK 3 280 - -
Vra5g0998 295 SMART serkin_6 32 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0998 295 CDD STKc_Aurora 31 284 - -
Vra5g0998 295 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 1 295 IPR030616 GO:0004672
Vra5g0998 295 Pfam Protein kinase domain 32 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0998 295 Gene3D Transferase(Phosphotransferase) domain 1 116 291 - -
Vra5g0998 295 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Vra5g0998 295 Gene3D Phosphorylase Kinase; domain 1 20 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0998 Vra-Chr5 16418820 16421489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0998 24 294 CBL-interacting serine-threonine protein kinases AT5G10930 35.612 9.49e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Vra5g0998 Pkinase 8.5e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0998 K08850 - gmx:100775451 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0998 5 16418820 16421489 Vra5g0998 5 16418820 16421489 ECH