Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0982 ATGAACCACCATCCTTTCATCACCCTCTTCTCTACTATACTAATCGTTTCCACCACCACCACCGCCACCCTGTCACTCTCCCAGGTTATCATCACGAGTAGCACCACCAAGAACCAGTCACAGTTTTTCTTTCTCATGAAACTCTCCCTCCCCGGGAAGTACCCCATGAATTGGGATGCTGGAAAACCCGTGTGCAGCTTCACCGGAGTTACCTGTAACACCAAAGGTGACGTTATCGGCCTCGACCTTTCAGGTTGGTCATCACTTACTGGAAAGTTCCCCGCAGATACGTGCTCTTACCTCCCACAGTTACGTGTTCTCCGCCTCGGCCACACCAGGTTCAAGTTCAACGTAGACACCATCCTCAACTGTTCCCAGTTGGAAGAGCTTAACATGAACCACATGTCCCAGACCGGCACGCTCCCAGATTTCTCTTCCTTGAAATCTCTAAGGATTCTCGATTTGTCCTACAACGACTTCACAGGCCAGTTCCCCATGTCAGTGTTCAACCTCACCAACCTCGAGGTGTTAAACTTCAATGAAAACCAAGGCTTCAACCTGTGGCAGTTACCTGCAGATATTGACAGGTTGAAACACCTCAAGTCCATGGTTCTCACGACGTGCATGGTGCATGGTCAAATCCCTGCGTCCATAGGGAACATAACTTCCCTCATCGATCTTGAGCTGAGTGGGAATTACCTCACGGGACAAATTCCGAAAGAGCTTGGTCAGCTGAAGAACCTTCAACAGCTTGAGCTTTACTATAACTACCATCTCGTTGGGAACATTCCAGAGGAGTTGGGGAACCTCACGGAGCTCGTGGATTTGGATATGTCAGTGAACAAGTTTACCGGGAGCATCCCTGAGTCGGTTTGTAGGCTTCCCAAGCTTCAAGTCTTGCAGCTCTACAACAACAGCCTCACAGGTGAAATCCCAGGTGCGATTGAAAACTCAACAGCTTTAAGAATGTTGTCTCTGTACGACAACTTCCTTGTAGGACAGGTTCCCAAGAAACTGGGACAGTTCTCTGAAATGTTAGTTTTTGACTTGTCGGAGAATAAATTTTCTGGTCCGTTGCCAACCGAGGTTTGCAAGGGTGGTACGCTAGAGTACTTTCTTGTTCTGGATAACATGTTTTCTGGAGAGATACCACAGAGTTATTCGAACTGCATGATGCTGTTGAGGTTTAGAGTGAATAACAACCGTTTGGAGGGTTCCATTCCCGCGGGACTCCTTGGTTTACCACACGTTTCAATCATTGATGTTAGTAACAATAACTTGAATGGTCCAATTCCTGAGATTAACGGGAATTCTAGAAACCTGTCTGAACTGTTCCTTCAGAGGAACAAAATTTCAGGTGTCATAACTCCCACAATATCTCGAGCCATTAGTCTGGTCAAAATAGATTTCAGTTACAACCTTCTATCTGGTCCAATCCCTTCCGAAATAGGCAACCTCAGAAGGCTCAATTTGCTTATGTTGCAAGGGAACAAGCTGAATTCTTCCATCCCTGGTTCACTCTCTTCATTGAAGTTTCTCAACCTTCTTGATCTGTCCAACAATCTTTTAACTGGGAGCATCCCTGAAAGCCTCTCTGTGCTGCTTCCAAACTCTATTAACTTCTCGCACAATATGCTTTCGGGTCCAATTCCTCCCAAACTGATCAAAGGAGGCTTGGTGGAAAGTTTCGCAGGGAATCCTGGTTTGTGTGTGCTACCTGTGTATGCCAATTCATCGGATCGAAACTTCCCCATATGTGCAAGTGCCTACAAGAGCAAGAGGATCAACACCATCTGGATAGCTGGGGTGTCAGTGGTTTTGATCTTTATTGGGTCTGTCTTGTTTCTCAAACGTAGGTGCAGCAAAGACACCGCTGCAGTGGAACATGAGGAGACACTGTCTTCATCGGTTTTCTCTTATGACGTTAAGAGCTTCCACAAGATCTCTTTCGACCAAAGGGAGATCGTTGAGTCCTTGGTGGACAAGAACATAATGGGGCATGGAGGGTCTGGGACAGTGTACAAGATTGAGTTGAAAAGTGGTGATATTGTCGCAGTGAAGAGGCTGTGGAGTCGCAAGTCCAAGGATTCAACTCCAGAGGATCGGTTGTTTGTGGACAAGGCATTGAAGGCAGAGGTGGAGACCTTAGGAAGCATAAGACACAAGAACATAGTGAAACTATACTGCTGCTTCTCCAGTTTCGACTGCAGTTTATTGGTTTATGAATACATGCCAAATGGTAATCTTTGGGATTCCCTGCACAAGGGTTGGACCCTTTTGGATTGGCCTACTCGTTATAGAATTGCACTGGGAATTGCACAGGGTTTATCATACCTTCACCATGATTTGCTTCTTCCTATTATCCATCGAGACATCAAGTCAACTAATATCCTGTTGGATGTTGATTACCAGCCCAGGGTTGCAGACTTTGGGATTGCCAAGGTTTTGCAAGCAAGAGGAGTGAAGGATTCCACGACAACTGTCATTGCAGGAACATATGGTTACTTAGCCCCAGAATTTGCATATTCATCAAGGGCCACCACCAAGTGCGACGTCTACAGTTTTGGGGTGATTTTGATGGAGCTGTTAACTGGGAAGAAGCCCGTGGAGGCAGAGTTTGGAGAGAACAGAAACATTGTTTTCTGGGTTTCCAACAAAGTAGAAGGCAAGGAGGGGGCAAGACCAAGTGAAGTTTTTGATCCGAGGTTATCATGTTCATTCAAGGATGACATGATCAAAGTGTTGCGGATTGCCATTCGCTGCACCTACAAAGCCCCAACAAGTAGACCAACCATGAAAGAGGTTGTTCAGCTTCTGATTGAAGCAGAGCCACGCGGCTCCGATTCTTGCAAGTTGTCAACCAAAGATGTTTCAAATGTCACCGTAGTAAAGAAACCATATGAATTATAA 2910 0.4601 MNHHPFITLFSTILIVSTTTTATLSLSQVIITSSTTKNQSQFFFLMKLSLPGKYPMNWDAGKPVCSFTGVTCNTKGDVIGLDLSGWSSLTGKFPADTCSYLPQLRVLRLGHTRFKFNVDTILNCSQLEELNMNHMSQTGTLPDFSSLKSLRILDLSYNDFTGQFPMSVFNLTNLEVLNFNENQGFNLWQLPADIDRLKHLKSMVLTTCMVHGQIPASIGNITSLIDLELSGNYLTGQIPKELGQLKNLQQLELYYNYHLVGNIPEELGNLTELVDLDMSVNKFTGSIPESVCRLPKLQVLQLYNNSLTGEIPGAIENSTALRMLSLYDNFLVGQVPKKLGQFSEMLVFDLSENKFSGPLPTEVCKGGTLEYFLVLDNMFSGEIPQSYSNCMMLLRFRVNNNRLEGSIPAGLLGLPHVSIIDVSNNNLNGPIPEINGNSRNLSELFLQRNKISGVITPTISRAISLVKIDFSYNLLSGPIPSEIGNLRRLNLLMLQGNKLNSSIPGSLSSLKFLNLLDLSNNLLTGSIPESLSVLLPNSINFSHNMLSGPIPPKLIKGGLVESFAGNPGLCVLPVYANSSDRNFPICASAYKSKRINTIWIAGVSVVLIFIGSVLFLKRRCSKDTAAVEHEETLSSSVFSYDVKSFHKISFDQREIVESLVDKNIMGHGGSGTVYKIELKSGDIVAVKRLWSRKSKDSTPEDRLFVDKALKAEVETLGSIRHKNIVKLYCCFSSFDCSLLVYEYMPNGNLWDSLHKGWTLLDWPTRYRIALGIAQGLSYLHHDLLLPIIHRDIKSTNILLDVDYQPRVADFGIAKVLQARGVKDSTTTVIAGTYGYLAPEFAYSSRATTKCDVYSFGVILMELLTGKKPVEAEFGENRNIVFWVSNKVEGKEGARPSEVFDPRLSCSFKDDMIKVLRIAIRCTYKAPTSRPTMKEVVQLLIEAEPRGSDSCKLSTKDVSNVTVVKKPYEL* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0982 969 Gene3D Phosphorylase Kinase; domain 1 642 743 - -
Vra5g0982 969 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Vra5g0982 969 SMART serkin_6 659 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0982 969 Pfam Protein kinase domain 661 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0982 969 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 19 950 - -
Vra5g0982 969 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR1 19 950 - -
Vra5g0982 969 Gene3D Ribonuclease Inhibitor 43 186 IPR032675 -
Vra5g0982 969 Gene3D Transferase(Phosphotransferase) domain 1 744 963 - -
Vra5g0982 969 ProSiteProfiles Protein kinase domain profile. 659 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0982 969 SUPERFAMILY RNI-like 262 581 - -
Vra5g0982 969 Gene3D Ribonuclease Inhibitor 187 290 IPR032675 -
Vra5g0982 969 SUPERFAMILY RNI-like 81 356 - -
Vra5g0982 969 SUPERFAMILY Protein kinase-like (PK-like) 645 939 IPR011009 -
Vra5g0982 969 Gene3D Ribonuclease Inhibitor 294 580 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0982 Vra-Chr5 16232594 16236562 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0982 35 946 Receptor kinase-like Gene Family AT5G49660 64.418 0.0 1201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra5g0982 Pkinase 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0982 - - gmx:100785822 1705.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0982 5 16232594 16236562 Vra5g0982 5 16232594 16236562 ECH