Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0981 ATGTCCGCCGCCTTTCGCATCCTTCTTCTTCTCTCACTCTTCTCTCTACTCACCGCCCAACAGCAAGACCAGCGTCAAATCCTTCTCAACCTAAAATCCTCTCTCAAGAGTTCAAACTTTTCAAAACTCTTTGACTCATGGAATGACACCATCTCCGTTTGCAGTTTCAACGGAGTAACTTGCAACACCCTCCGTTCGGTCACCGAAATCAACCTCTCCAACCAAAATCTGACTGGGGTTCTTCCCTTTGACTCTCTCTGCAACCTTCCATCACTCCAGAAACTCGCGTTCGGCTACAACGGCTTGTATGGCAATGTTTCAGAGGACATTAGAAAATGTGTCACCTTGCGCTACTTGGATTTGGGAAACAACCTTTTCTCTGGTCCCTTCCCCGACATATCTCCTCTTAATCAGTTGGAGTATTTGTTTTTAAACAAAAGTGGATTTTCTGGCACTTTTCCGTGGCAGTCGCTGTTAAACATGACGGGTCTGTTGCAGTTAAGTGTCGGAGATAACCCTTTCGATTTCACGCCGTTTCCAAAAGAGGTTGTGAGTCTCAAGAAGCTGAATTGGCTCTACCTGTCCAACTGCACCCTCGGAGGGAAACTTCCGGTGGGACTTGGCAACCTCACGGAGCTCACGGATTTGGAATTCTCCGACAATTACATCACCGGCGAATTTCCCGCGGAGATTGTGAACCTCCGGAAACTCTGGCAGCTTGAGTTTTTCAACAATTCCTTCACGGGGAAGATTCCAACCGGGTTGAGAAACCTCACGGGGCTAAAGTATTTGGACGGCTCCATGAATAGACTCGAAGGGGATCTTTCTGAATTGAAGTACTTGACCAATCTGGTTTCGCTGCAATTTTTTGAGAACAATTTGTCAGGGGAGATTCCTGATGAAATAGGCGAATTCAAAGGCCTCAAGGCCCTGTCTCTGTATAGGAACAAATTGACAGGTCCTATTCCTCAGAAGGTTGGTTCCTGGGCTGAGTTTGAATTCATCGACGTGTCAGAGAATTTCTTGTCGGGGACTATTCCGCCGGAGATGTGTAAAAAGGGGAAGATGACCGCACTGCTCGTGCTTCAGAACAATCTCTCCGGTGAGATTCCGGCGACCTATGGAGACTGTTGGAGTATGAAGCGATTCAGAGTCAGCAATAACTCGCTCTCTGGTACTGTGCCACCGGCGATTTGGGGATTGCCCAACGCCGAAATTATCGATATTGAGCTGAATCAGTTCGAAGGTTCGCTTGCTTCGGATATCAGAAACGCCAAAACATTAGGTTCAATATTAGCTAGGCAAAATCGGTTGTCCGGTGAAATACCCGAAGAAATCTCCAAAGCAACGTCGTTGGTGACTGTGGACCTGAGCGAGAATCAGATTTCGGGGAAGATTCCAGAAGGAATCGGGGAGCTTAAAGAACTAGGTAGTCTTCATTTGCAGAGCAATAGGTTATCAGGTTCGATACCGGAATCTCTCGGTTCCTGCAAATCCCTCAACGACATTGACCTATCGAGGAATTTACTCTCTGGAGAAATCCCCAACTCGTTGGGTTCTTTCCCCGCGCTGAATTCTCTGAATCTTTCAGATAACGATCTCTCTGGTGAAATTCCTGGGGGTTTAGCGTTCCTCAGGTTAAGCCTCTTTGATCTATCGTACAACCGGTTAACGGGTCCAATTCCTCAGGCTCTAACCCTCGAAGCTTACAACGGAAGCCTCTCGGGAAACCCTGGTTTGTGCAGCGTCGACGCCATCAACTCCTTCCCCCGTTGCTCTTCTTCCTCTGGCATGTCCAAGGACATGCGTGATCTCGTAATTTGCTTCGCGATAGCGTCGATATTACTGCTTTCGTGTTTGGGCGTTTACTTGCAGCTGAAGAGGAGGAAGGAGGATGGAGAAAGATTCGGAGAACGTTCCTTGAAGGAAGAATCCTGGGACGTGAAATCGTTCCACGTGTTAAGTTTCTCGGAGGGGGAGATTCTAGATTCCATCAAGCAGGAGAATCTGATAGGAAAAGGAGGTTCAGGAAACGTTTACAGAGTCACGCTTTCCAACGGAAAAGAACTGGCGGTGAAGCATATTTGGAACACCGATGTACCCGCGCGGAAAAAGTCGTGGAGCAGCACTCCCATGCTTGGGAATAAGCAGGGTGGGAAGTCTAAGGAGTTCGATGCAGAGGTTCAGGCTTTGAGCTCCATAAGGCACGTGAATGTGGTGAAGCTTTATTGCAGCATAACGAGTGAAGATTCGAGCTTGTTGGTGTACGAGTATTTACCCAATGGAAGCTTGTGGGATCGGCTTCACACAAGTAGAAAGATGGAGCTTGATTGGGAAACGAGGTACGAAATCGCTGTTGGGGCAGCCAAAGGATTGGAGTATTTGCATCACGGATGCGAACGGCCCGTGATTCACAGAGATGTCAAGTCTAGTAACATCTTGTTGGATGAGTTTCTGAAACCTAGAATTGCGGATTTTGGGCTTGCCAAGGTTATTCAGGCCAACGTTGGAAAGGATTCTTCCTCTCGTGTCATCGCCGGAACCCACGGTTACATTGCTCCTGAATATGGTTATACATACAAAGTAAACGAGAAGAGTGACGTGTACAGTTTTGGAGTGGTGTTGATGGAGCTGGTAACAGGAAAAAGGCCAAATGAAGCAGAATTTGGGGAGAATAAGGATTTGGTGAGTTGGGTCCATAACATGGCACGGAGCAAAGAGGGTCTTAGGAGCGCCGTGGATTCGAGGATTCCAGAAATATATAAAGAGGAAGCTTGCAAGGTTTTGAGAACCGCTGTTCTGTGCACTGGAACTCTTCCAGCTTTAAGACCCACCATGAGAGCTGTGGTTCAAAAACTTGAGGATGCTGAGCCTTGTAAACTGGTTGGGATTGTTATCAGCAAAGACGGTGGTGAAAAGAAAATAGGAGTGAATGAGAAGAAATAA 2946 0.4735 MSAAFRILLLLSLFSLLTAQQQDQRQILLNLKSSLKSSNFSKLFDSWNDTISVCSFNGVTCNTLRSVTEINLSNQNLTGVLPFDSLCNLPSLQKLAFGYNGLYGNVSEDIRKCVTLRYLDLGNNLFSGPFPDISPLNQLEYLFLNKSGFSGTFPWQSLLNMTGLLQLSVGDNPFDFTPFPKEVVSLKKLNWLYLSNCTLGGKLPVGLGNLTELTDLEFSDNYITGEFPAEIVNLRKLWQLEFFNNSFTGKIPTGLRNLTGLKYLDGSMNRLEGDLSELKYLTNLVSLQFFENNLSGEIPDEIGEFKGLKALSLYRNKLTGPIPQKVGSWAEFEFIDVSENFLSGTIPPEMCKKGKMTALLVLQNNLSGEIPATYGDCWSMKRFRVSNNSLSGTVPPAIWGLPNAEIIDIELNQFEGSLASDIRNAKTLGSILARQNRLSGEIPEEISKATSLVTVDLSENQISGKIPEGIGELKELGSLHLQSNRLSGSIPESLGSCKSLNDIDLSRNLLSGEIPNSLGSFPALNSLNLSDNDLSGEIPGGLAFLRLSLFDLSYNRLTGPIPQALTLEAYNGSLSGNPGLCSVDAINSFPRCSSSSGMSKDMRDLVICFAIASILLLSCLGVYLQLKRRKEDGERFGERSLKEESWDVKSFHVLSFSEGEILDSIKQENLIGKGGSGNVYRVTLSNGKELAVKHIWNTDVPARKKSWSSTPMLGNKQGGKSKEFDAEVQALSSIRHVNVVKLYCSITSEDSSLLVYEYLPNGSLWDRLHTSRKMELDWETRYEIAVGAAKGLEYLHHGCERPVIHRDVKSSNILLDEFLKPRIADFGLAKVIQANVGKDSSSRVIAGTHGYIAPEYGYTYKVNEKSDVYSFGVVLMELVTGKRPNEAEFGENKDLVSWVHNMARSKEGLRSAVDSRIPEIYKEEACKVLRTAVLCTGTLPALRPTMRAVVQKLEDAEPCKLVGIVISKDGGEKKIGVNEKK* 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0981 981 Gene3D Ribonuclease Inhibitor 280 352 IPR032675 -
Vra5g0981 981 ProSiteProfiles Protein kinase domain profile. 665 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0981 981 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524
Vra5g0981 981 Gene3D Ribonuclease Inhibitor 180 279 IPR032675 -
Vra5g0981 981 SUPERFAMILY Protein kinase-like (PK-like) 656 953 IPR011009 -
Vra5g0981 981 Gene3D Transferase(Phosphotransferase) domain 1 759 962 - -
Vra5g0981 981 PANTHER RECEPTOR-LIKE PROTEIN KINASE 7 6 966 - -
Vra5g0981 981 Pfam Leucine rich repeat N-terminal domain 22 62 IPR013210 -
Vra5g0981 981 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Vra5g0981 981 Pfam Protein kinase domain 667 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0981 981 Gene3D Ribonuclease Inhibitor 20 179 IPR032675 -
Vra5g0981 981 SMART serkin_6 665 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0981 981 Gene3D Ribonuclease Inhibitor 353 594 IPR032675 -
Vra5g0981 981 Pfam Leucine rich repeat 475 534 IPR001611 GO:0005515
Vra5g0981 981 SUPERFAMILY L domain-like 271 591 - -
Vra5g0981 981 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 6 966 - -
Vra5g0981 981 SUPERFAMILY RNI-like 51 320 - -
Vra5g0981 981 Gene3D Phosphorylase Kinase; domain 1 648 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0981 Vra-Chr5 16214504 16217967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0981 5 973 Receptor kinase-like Gene Family AT1G09970 61.088 0.0 1155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra5g0981 Pkinase 1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0981 - - gmx:100779554 1689.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0981 5 16214504 16217967 Vra5g0981 5 16214504 16217967 ECH