Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0980 ATGCCCGAGGAGAATGTTCAGAAATCGTTCGAGGCGTTCTACGAGGAATGGCTTGCGCGGCACGAAAATTTCCTTCAGCAGCTTCTGAGCGTCGAGCCCAATGATAACGATGCAGAACAGAGGATGCTGATCGAGCAAGTTATGTGTCATTACCAGAAATTTTTGGAAGAGAAATCGAACGTGGCCAACGGCGACGTTTTCCTTCTCTTTTCCCCGCCCTGGCTTTCCGCCTACGAGAGATTGCTGCTCTGGATTGGGGACTACAAGCCCTCACTCATTCTCCGTCTCGCCGACGGCAATGTCACAGGCTTAACGGCGGAGCAGAGGGAGAAAATGGAGCGAGTCAGCGACGAGATCAAGCGAGCTGAGAGAGAGGTTTCCGAGGCAATGGCTTCCATTCAAGAGAGCATGGCGAGTCCGCGCATGCTGGCGCTCGTCAGAGTGGTTGACGGCGAGAAAACGGAGCAGCAAGCGGCACTTTAG 483 0.5404 MPEENVQKSFEAFYEEWLARHENFLQQLLSVEPNDNDAEQRMLIEQVMCHYQKFLEEKSNVANGDVFLLFSPPWLSAYERLLLWIGDYKPSLILRLADGNVTGLTAEQREKMERVSDEIKRAEREVSEAMASIQESMASPRMLALVRVVDGEKTEQQAAL* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0980 160 Coils Coil 105 139 - -
Vra5g0980 160 Pfam Seed dormancy control 27 96 IPR025422 GO:0006351|GO:0043565
Vra5g0980 160 PANTHER - 3 155 - -
Vra5g0980 160 PANTHER TRANSCRIPTION FACTOR HBP-1B 3 155 - -
Vra5g0980 160 ProSiteProfiles DOG1 domain profile. 7 160 IPR025422 GO:0006351|GO:0043565
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0980 9 138 bZIP Transcription Factor Family AT5G06950 31.298 1.28e-17 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0980 - - vra:106760373 317.775