Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0979 ATGGCGAATCAAGAAACTCAGCAGCGCCGTCCCCGTCAACAACGCCGGACCAAGGGTCGACCGGTGGTCCCGGCTAGGGTTCCGTTGAGGCTGTTGCTGCGGGTAGCGTCGGTTGCCGGAGGCATTCAGTTTGGGTGGGCATTGCAGCTCTCGCTTCTGACGCCGTACGTGCAGCAGCTGGGGATCCCACACGTGTGGGCCAGCATCATATGGCTGTGTGGGCCGCTCTCTGGGCTGCTGGTGCAGCCCCTGGTGGGCCACTTGAGCGACCGCTGCACCAGCCGGTTCGGCCGCCGGAGACCGTTTATCTTGGGCGGAGCATTGGCGATCATCATTGCTGTTCTGATCATCGGTCACTCCGCGGACATCGGGTGGTGGTTCGGCGACACGCCCAAACATCGCCCCTGGGCTGTGGGTGTTTTCGTTTTCGGGTTTTGGATTTTGGACGTGGCTAACAACGTCACTCAGGGCCCTTGTAGAGCCTTGCTTGGTGATCTCACTGGCAAGGATCACCGAAGGACACGTGTTGCAAATGCTTATTTCTCCCTGTTTATGGCTATTGGTAATATTCTTGGATATGCAGCTGGATCATACAGTGGTTGGTACAGGGTCTTTGCTTTCACTATGACCCCTGCATGCAATATTAGTTGTGCAAATCTCAAGTCTGCTTTCTATCTTGATGTTGGTTTCATCGCTGTCACCACTTATATAAGCATCATGGCAGCTCATGAAGTGCCTCTGAGTTCTAGTGGGGCACAACCTGTTGAAGCAGCAGCAGGGGAATCGGGTGCTGCTGGAGAAGCTTTTCTGTGGGAGCTATTCGGGACAGTCAGATATTTTTCAACCCCAGTTTGGACAATACTGTCCGCTACTGCCTTAACTTGGATTGGATGGTTTCCATTTCTCCTTTTCGATACTGATTGGATGGGCCGAGAGATTTACGGTGGTGAACCAAATGAAGGCCCTAATTATGATACTGGAGTTAGAATGGGGGCAATGGGCTTATTGCTTAATTCAGTTGTTCTTGGAATAACGTCTGTACTCATGGAGAGGTTATGCAGGAAGCGGGGGGCTGGGTTTGTGTGGGGAATCTCAAATATCTTGATGGCTGTCTGCTTTATTGCAATGCTTATTGTAACCTATCTGGCAAATAGAATTGGCTATATAGGCAAAGAACTACCACCAACTGGCATTGTGATTGCTGCATTGACAATCTTTACCGTTCTTGGGTTTCCACTTGCAATCACTTACAGTGTTCCATATGCCTTAATTTCCACACATATTCAGTCATTGGGACTCGGCCAAGGATTGTCAATGGGGGTCCTAAATCTAGCAATAGTGTTCCCACAGATGGTGGTGTCCCTGGGAAGTGGACCGTGGGATCAGCTATTTGGTGGAGGAAATTCTCCGGCCTTTGCCGTGGCAGCTGTTGCAGCCCTTCTCAGTGGATTACTAAGTATCTTGGCTATTCCCCGACCTGGCGGTAAAAAGTCTACAAGTCAAGTATGA 1509 0.5083 MANQETQQRRPRQQRRTKGRPVVPARVPLRLLLRVASVAGGIQFGWALQLSLLTPYVQQLGIPHVWASIIWLCGPLSGLLVQPLVGHLSDRCTSRFGRRRPFILGGALAIIIAVLIIGHSADIGWWFGDTPKHRPWAVGVFVFGFWILDVANNVTQGPCRALLGDLTGKDHRRTRVANAYFSLFMAIGNILGYAAGSYSGWYRVFAFTMTPACNISCANLKSAFYLDVGFIAVTTYISIMAAHEVPLSSSGAQPVEAAAGESGAAGEAFLWELFGTVRYFSTPVWTILSATALTWIGWFPFLLFDTDWMGREIYGGEPNEGPNYDTGVRMGAMGLLLNSVVLGITSVLMERLCRKRGAGFVWGISNILMAVCFIAMLIVTYLANRIGYIGKELPPTGIVIAALTIFTVLGFPLAITYSVPYALISTHIQSLGLGQGLSMGVLNLAIVFPQMVVSLGSGPWDQLFGGGNSPAFAVAAVAALLSGLLSILAIPRPGGKKSTSQV* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0979 502 PANTHER SUGAR TRANSPORTER 8 498 - -
Vra5g0979 502 MobiDBLite consensus disorder prediction 1 20 - -
Vra5g0979 502 SUPERFAMILY MFS general substrate transporter 30 496 IPR036259 -
Vra5g0979 502 Pfam MFS/sugar transport protein 47 194 - -
Vra5g0979 502 PANTHER SUCROSE/H+ SYMPORTER, PLANT, MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED 8 498 - -
Vra5g0979 502 TIGRFAM GPH_sucrose: sucrose/H+ symporter 27 493 IPR005989 GO:0005887|GO:0008515|GO:0015770
Vra5g0979 502 Gene3D MFS general substrate transporter like domains 29 488 IPR036259 -
Vra5g0979 502 CDD MFS_SLC45_SUC 32 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0979 Vra-Chr5 16157432 16180915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0979 1 497 Sucrose Transporter Gene Family AT1G09960 68.235 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0979 K15378 - gmx:100787939 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0979 5 16157432 16180915 Vra5g0979 5 16157432 16180915 ECH