Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0973 ATGGGTACTGGTTGGAGGAGAGCCTTCTGCACCCGCGACCCAGCTTCTACCATATCGGATAAACAGCCCGGCAGCCCAAGCCCAAGCCCCAGCCCAAGAAGCTGTGCCCGTTTGGGTTTTCTCTCCGGAGGGAGCAACCCTTCCACCCCACGCTTGCGCTGCACAACTACACCAGAATCTGCTTCTCAAACAGTTACTGTAAACGAAAGCCCCAGAGTTCAAAGCAGGAACACCTCCAGAACAACTAAGTCTCCGAAAACGCTTTCTGTCTCAAATCCATCTTCACCGCGTTCTCCTCTCAAGCTCTCCCTCTTCAAGAACAGTTTCAAATTCAGGAGTAGCTGTGGAATTTGCTTGAACAGCGTGAAGACGGGACAGGGTACGGCTATATACACTGCGGAATGTGGTCACGCGTTTCATTTCCCGTGTATCGCAGCGCATGTGCGCAAACATGGTAGCCTGGTGTGCCCCGTCTGCAACGCCACGTGGAAGGACGTCCCACTACTCGCGGCGCACAAGAACCTCGCTGCGCAATCCGCCACGCAAAACGACGTCGCTCAAAGGACCACCGAAAACACCAATGCCAACGTCAAAAAGCCAACAGAAAACACATCCCCCGTTTTCAAGACCTACAACCAGGTGGAGCCCCCGCCCAAACATACCGATTCGCTTCGGTCCTACGACGACGACGAGCCACTCCTCTCTCCCACCTCAGGCGGAAGGATCATTCCTATTCCCGAAGCCGACGAGAATGTCGAAGAAGACGACGAAGAAGAAGACGCCGGGGAGTTCCAGGGCTTTTTCGTCAACACCAGGAACTCCTCCTCCTCAAAATCGTACTCCGATTCATTCCAAACAACTGACGGAGATTCCAGAACGGTTCAGGTGAAACTCATGCCGGAGTGCGCAGTTATCTCAGCTTCCCGAACGCACGAGACCTACGCGTTGGTGTTGAAAGTCAAGGCTCCGCCTCCACCATCTCCACCACGGAGCAGCACGGCGCCATCGCAACGTGCGCCGATAGATCTCGTCACCGTGCTCGACGTTGGTGGAAACATGACCGGAGCGAAGCTGCACATGCTGAAGCGCGCGATGCGTTTGGTTGTTTCATCGCTTGGCCCCGCCGACAGGCTCTCAATCGTCGCTTTCTCAGCCACTTCGAAACGGCTCTTGCCTCTACGCAGAATGACGGCCCAGGGTCAGCGCGTGGCTCGACGCATAGTTGACCGGCTCGTTGTAGGTCAAGGTTCGAGCGTAGGCGAGGCGTTGAGGAAGGCGACGAGAGTGTTAGAGGATCGCAGAGAGAGAAACCCGGTGGCTAGCGTGATGCTGTTATCGGACGGTCAAGAAGAGAGGGTTCAGAATCAGAGGGGTAACAGTAGTGGTCAGAGAAAGGCTTCGAGTCACGTGTCGTCGACGCGGTTCGCGCATATCGAGATTCCGGTTCACGCTTTCGGGTTCGGGGCGAAAAGCGGTTTCAGCCAGGAACCGGGGGAGGAGGCGTTCGCTAAGTGCGTGGGTGGGCTTCTGAGCGTGGTGGTGCAGGATTTGAGGATTCAAGTGGGCTTTGAGTCAGAGGCGGTGGAGATGAGCGCGATTTACTCGTGCAGTGGAAAGCCCAGTCTGCTGAGCTCAGGGGCGGTGCGGCTGGGCGACTTGTACGCGGAGGAAGAGAGGGAGCTGTTGGTGGAGTTGAGAGTTCCCGCGTCGTCAGGTCATGGGACCCACCACGTGATGGCTGTACGGTGCCTCTATAAGGACCCTGCTAGCCAGGAGATCGTATACGGTAGGGAGCAGGGTCTTCTGGTGCCGCCGCCTCAGAGCCTGCGTTGTTCCGGTACTAGGATCCAGAGGCTCAGGAATCTCTTCATAACTACCCGAGCCATTGCAGAGTCCAGGAGGCTTCTTGAGCATAACGCTGACTTCACCAGCGCGCATCATTTGCTTGCCTCAGCGCGTGCACTTCTCATGCACTCCAACGCCGCTTCGGCTGATGACTACATGCGCGCCTTGGAGGCCGAGCTGGCAGAGCTTCATTGGCGAAGACAGCACGAGCAGGTTCAGGTTCAGGTTCAGCAACAGCAGCAAAGTATGCAACAGCGGAGAAGAGGGAGTGAGAGAGAGGTGACTTTGGTTGACGAGAATGGCGAGCCGCTTACACCGACGTCAGCTTGGAGAGCCGCCGAGAAGCTGGCTAAGGTGGCGATGATGAAGAAGTCTTTGAACAGAGTTAGCGACTTGCACGGCTTCGAAAACGCTAGGTTTTAA 2268 0.5635 MGTGWRRAFCTRDPASTISDKQPGSPSPSPSPRSCARLGFLSGGSNPSTPRLRCTTTPESASQTVTVNESPRVQSRNTSRTTKSPKTLSVSNPSSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGTAIYTAECGHAFHFPCIAAHVRKHGSLVCPVCNATWKDVPLLAAHKNLAAQSATQNDVAQRTTENTNANVKKPTENTSPVFKTYNQVEPPPKHTDSLRSYDDDEPLLSPTSGGRIIPIPEADENVEEDDEEEDAGEFQGFFVNTRNSSSSKSYSDSFQTTDGDSRTVQVKLMPECAVISASRTHETYALVLKVKAPPPPSPPRSSTAPSQRAPIDLVTVLDVGGNMTGAKLHMLKRAMRLVVSSLGPADRLSIVAFSATSKRLLPLRRMTAQGQRVARRIVDRLVVGQGSSVGEALRKATRVLEDRRERNPVASVMLLSDGQEERVQNQRGNSSGQRKASSHVSSTRFAHIEIPVHAFGFGAKSGFSQEPGEEAFAKCVGGLLSVVVQDLRIQVGFESEAVEMSAIYSCSGKPSLLSSGAVRLGDLYAEEERELLVELRVPASSGHGTHHVMAVRCLYKDPASQEIVYGREQGLLVPPPQSLRCSGTRIQRLRNLFITTRAIAESRRLLEHNADFTSAHHLLASARALLMHSNAASADDYMRALEAELAELHWRRQHEQVQVQVQQQQQSMQQRRRGSEREVTLVDENGEPLTPTSAWRAAEKLAKVAMMKKSLNRVSDLHGFENARF* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0973 755 ProSiteProfiles VWFA domain profile. 342 488 IPR002035 -
Vra5g0973 755 Pfam von Willebrand factor type A domain 343 449 IPR002035 -
Vra5g0973 755 MobiDBLite consensus disorder prediction 181 288 - -
Vra5g0973 755 MobiDBLite consensus disorder prediction 181 219 - -
Vra5g0973 755 Pfam RING-like zinc finger 115 144 IPR001841 -
Vra5g0973 755 MobiDBLite consensus disorder prediction 448 468 - -
Vra5g0973 755 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 212 IPR013083 -
Vra5g0973 755 ProSiteProfiles Zinc finger RING-type profile. 115 160 IPR001841 -
Vra5g0973 755 MobiDBLite consensus disorder prediction 692 717 - -
Vra5g0973 755 MobiDBLite consensus disorder prediction 267 288 - -
Vra5g0973 755 CDD vWA_C3HC4_type 341 514 - -
Vra5g0973 755 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 755 - -
Vra5g0973 755 SMART ring_2 115 159 IPR001841 -
Vra5g0973 755 SUPERFAMILY RING/U-box 109 165 - -
Vra5g0973 755 Gene3D von Willebrand factor, type A domain 342 512 IPR036465 -
Vra5g0973 755 MobiDBLite consensus disorder prediction 41 98 - -
Vra5g0973 755 SMART VWA_4 340 529 IPR002035 -
Vra5g0973 755 MobiDBLite consensus disorder prediction 444 468 - -
Vra5g0973 755 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 3 755 - -
Vra5g0973 755 SUPERFAMILY vWA-like 340 518 IPR036465 -
Vra5g0973 755 MobiDBLite consensus disorder prediction 1 98 - -
Vra5g0973 755 CDD RING-H2 115 160 - -
Vra5g0973 755 MobiDBLite consensus disorder prediction 249 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0973 Vra-Chr5 16076077 16079383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0973 107 262 C3H Transcription Factor Family AT3G03550 25.316 2.82e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0973 - - gmx:100782780 1192.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0973 5 16076077 16079383 Vra5g0973 5 16076077 16079383 ECH