Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0972 ATGTCTCCACCATTGCTGGGCATAGGAGAGGAGGAGGGTAAAAGCAATGTCAGTTTGTTGGTTTCCTCATCAACCACCATGGAAAGTGTGTGCCTGAAGAATACCTTAGAATTGAAAGAACGCAACTACATGGGGTTATCTGATTGTTCTTCTGTAGACAGCTCCGTTCCGTCTTTCTCAGAAGACACTAAAAGTAATCTGAACCTGAAAGCCACCGAGCTCAGGCTTGGGCTTCCGGGATCACAGTCCCCTGAAAGAGATTCCGATTTTTGCTTAAGAAGCTCAACTCAATTTGATGAAAAACCCTTGTTTCCTTTGCGTCCTCTCACTGATGATCACCATTCTTCAACCAAGACTGCTGTTTTGGGAAACAAGAGAGGGTTTTCAGATGCCATGAATGGCTTCTCGGAGGGGAAGTTCCTAATCGATTCTGAGAACAATCCTATACTCTCTCCGAGGCCCGGTTCTAACTTGGGATTAAATCCTGGTTCTACACTTGAGAAGGCTGGGGCTCAGCAAATCAAAATGAAAGAAGCAGCAACAGCAAAGGAGCCTCATTCTGCCAATGAAACTAGACCAAGTATTGGTTGTTCTGCAAATAACAATAACAGTGCACCAGCTACCAAGGCTCAGGTTGTGGGGTGGCCCCCTATAAGATCATTCAGGAAGAATTCATTGGCAACTAATTCAAAGAACAATGAAGAAGTTGATGAAAAAGTAGGGGTTGGTGCACTGTTCGTCAAAGTCAGTATGGATGGTGCTCCCTATTTAAGGAAAGTGGACTTGAATAATTACTCTACATATCCAGAACTATCTTCTGCTCTTGAGAAGATGTTTAGCTGTTTTACCATAAGTCAGTGTGGATCTCATGGAATTCTGGGCAGGGAAATGCTGAATGAAACCAAGCTGAAGGACCTTCTTCATGGATCAGAATATGTTCTTACATATGAGGACAAAGATGGTGATTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTATTGAAACATGCAAGAGGTTGAGGATCATGAAGAGTTCTGATGCCATTGGTTTAGCTCCCAGGGCTGTTGAAAAAAGCAAAATCAGGACCTAG 1095 0.4365 MSPPLLGIGEEEGKSNVSLLVSSSTTMESVCLKNTLELKERNYMGLSDCSSVDSSVPSFSEDTKSNLNLKATELRLGLPGSQSPERDSDFCLRSSTQFDEKPLFPLRPLTDDHHSSTKTAVLGNKRGFSDAMNGFSEGKFLIDSENNPILSPRPGSNLGLNPGSTLEKAGAQQIKMKEAATAKEPHSANETRPSIGCSANNNNSAPATKAQVVGWPPIRSFRKNSLATNSKNNEEVDEKVGVGALFVKVSMDGAPYLRKVDLNNYSTYPELSSALEKMFSCFTISQCGSHGILGREMLNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCKRLRIMKSSDAIGLAPRAVEKSKIRT* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0972 364 PANTHER AUXIN-INDUCED PROTEIN 24 358 - -
Vra5g0972 364 ProSiteProfiles PB1 domain profile. 244 346 IPR000270 GO:0005515
Vra5g0972 364 MobiDBLite consensus disorder prediction 187 209 - -
Vra5g0972 364 SUPERFAMILY CAD & PB1 domains 243 345 - -
Vra5g0972 364 Pfam AUX/IAA family 72 355 IPR033389 -
Vra5g0972 364 MobiDBLite consensus disorder prediction 176 211 - -
Vra5g0972 364 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 358 IPR003311 GO:0005634|GO:0006355
Vra5g0972 364 Gene3D - 239 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0972 Vra-Chr5 16051204 16056203 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0972 247 349 B3 DNA Binding Superfamily AT2G46530 33.981 4.15e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vra5g0972 AUX_IAA 1.9e-92 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0972 K14484 - gmx:100783314 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0972 5 16051204 16056203 Vra5g0972 5 16051204 16056203 ECH