Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0970 ATGGAGCACTATGACCGTGATTTCTTGGAGGAACTGATAAGTACAGAAGAAACCCAGTTCTTCTGTAATGGCTGGAGTAGTTTTGACTGTATTGATCAAAACTCTCTACCGTACCTCCCCAACTCTTCTTCTGGTCAAGAAGTTCCTCAAAGCTACAACGACTACTACCCCTTCAATGAAATCTATGGCTCTTTACTCGATGAATCCTCACCACAGATTATCGATTCTTACTATAGTACACTTGATACTCCACTCAACACCCTTGGTCAAGAGGATTATCCATTGTCCTTTATGGAAGAAGAGGACCCCGGTATGCTTGGGGAAGAGCTTAAGAATTTGGAGCTGCAAACTACGTGCAAAGCGGAGCCAACCCAGTCCTCCGAAATGCCAGTTTTCAACATCGGAACGGGTCTGGAAAGAAAAAATCGGTCAAAGAAGCTTCAGGGGCAACCCTCCAAGAATCTAATGGCGGAGAGGAGAAGAAGGAAGAGATTAAATGACAGACTCTCAATGCTGAGAGCTATTGTTCCCAAGATAAGTAAGATGGATAGAACATCTATACTTGGGGACACTATTGATTACATGAAAGAACTTCTGGAGAAGATCAACAATCTTAAGCAAGAAGTTGAAGTGGATTCTAAAATGGCATGCGTTTTCAAAGATGTGAAGCCAAATGAAATCCTAGTGAGAAATTCACCCAAGTTTGAAGTGGAGAGGAGTGTGGACACACGGGTGGAAATTTGCTGTGCAGGAAAGCAAGGATTGTTACAATCAACAGTAAACACTCTGGAGGCTTTAGGCCTTGAGATTCAACAATGTGTTATTAGCTGTTTCAATGATTTCACAATGCAGGCTTCTTGCTCAGAGGAATCGGAGCAAAGGGCAATGCTGAGTTCTGAAGATATAAAGCAAGCATTGTATAGAAGTGCAGGATATGGAGGAAGGTGTTTGTGA 954 0.4256 MEHYDRDFLEELISTEETQFFCNGWSSFDCIDQNSLPYLPNSSSGQEVPQSYNDYYPFNEIYGSLLDESSPQIIDSYYSTLDTPLNTLGQEDYPLSFMEEEDPGMLGEELKNLELQTTCKAEPTQSSEMPVFNIGTGLERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYMKELLEKINNLKQEVEVDSKMACVFKDVKPNEILVRNSPKFEVERSVDTRVEICCAGKQGLLQSTVNTLEALGLEIQQCVISCFNDFTMQASCSEESEQRAMLSSEDIKQALYRSAGYGGRCL* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0970 317 PANTHER DNA BINDING PROTEIN 42 317 - -
Vra5g0970 317 MobiDBLite consensus disorder prediction 140 161 - -
Vra5g0970 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
Vra5g0970 317 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 42 317 - -
Vra5g0970 317 Pfam Helix-loop-helix DNA-binding domain 155 198 IPR011598 GO:0046983
Vra5g0970 317 SMART finulus 155 204 IPR011598 GO:0046983
Vra5g0970 317 Coils Coil 188 215 - -
Vra5g0970 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 211 IPR036638 GO:0046983
Vra5g0970 317 Gene3D - 157 230 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0970 Vra-Chr5 16027013 16029029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0970 134 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 66.138 3.50e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra5g0970 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0970 - - gmx:100784380 541.191