Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0967 ATGGTGCTGAGGAAAGTGGGGAAGTATGAGATTGGGAGGACGATTGGGGAGGGGACTTTTGCGAAGGTGAAATTCGCTCAGAACACAGAAACTGGAGAGAGCGTGGCCATGAAAGTGCTCGACCGCAGCACCATCATCAAGCACAAGATGGTCGACCAGATCAAGAGGGAGATTTCCATTATGAAGCTTGTTAGACATCCTTATGTTGTTCGCCTGTACGAGGTTCTTGCGAGCCGTACTAAGATTTACATCATACTGGAGTTCATCACGGGTGGTGAATTGTTCGATAAAATTATACACCATGGTCGTCTTAGTGAAGCTGATTCTAGAAAATATTTTCAACAGCTTATTGATGGTGTAGATTATTGCCACAGTAAGGGAGTTTATCACAGAGATTTAAAGCCTGAAAATCTCTTACTTGATTCTCTGGGAAATATAAAGATTTCCGATTTTGGTTTGAGTGCATTGCCTGAACAGGGAGTGAGTATCCTTCGAACTACTTGTGGGACCCCAAACTATGTAGCTCCTGAGGTACTCAGTCATAAGGGTTACAACGGTGCTGTGGCAGATGTTTGGTCCTGTGGGGTTATCCTCTATGTCCTACTGGCCGGATATCTTCCCTTTGACGAGCTTGATCTAACCACCTTATATAGTAAGATTGAGAGAGCAGAATTTTCATGCCCTCCATGGTTTCCTGTGGCAGCAAAAATCTTGATAAATAGAATTTTGGACCCAAATCCTGAAACCCGTATAACCATTGAACAGATAAGAAATGATGAATGGTTTCAGAGGAGCTATGTTCCTGTCAGTCTTCTTGAGTATGAAGATGTAAATCTTGATGATATAAATGCTGCTTTTGATGAAACTGAGAGGGCTGAACAACAATGTGATAACGAGGACATGGGTCCCTTAATTCTTAATGCATTTGACTTGATAATTCTCTCTCAAGGTTTAAATCTTGGAACAATCTTTGATCGTGGACAGGACTCTGTAAAGTACCAAACCCGCTTTGTCACTCAAAAGCCAGCAAAGGTGGTTTTATCAAGTATGGAAGTCGTGGCACAATCAATGGGATTTAAAACACATATTCGCAACTACAAGATGAGGGTAGAGGGTGTTTCAGCAAATAAAACATCCTATTTTTCGGTCATCATGGAAATTTTTGAAGTGGCTCCCACATTTTACATGGTGGACATTCAGAAAGCAGCTGGAGATACTGGTGAATACCTCAAGTTTTATAAGAACTTTTGTAGCAATCTTGAGGATATAATCTGGAAACCCGCTCATGAAGCAACCAAATCAAGGATCTCCAAGACCAAAAGCAAAAGGCGATAG 1335 0.4157 MVLRKVGKYEIGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMVDQIKREISIMKLVRHPYVVRLYEVLASRTKIYIILEFITGGELFDKIIHHGRLSEADSRKYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNIKISDFGLSALPEQGVSILRTTCGTPNYVAPEVLSHKGYNGAVADVWSCGVILYVLLAGYLPFDELDLTTLYSKIERAEFSCPPWFPVAAKILINRILDPNPETRITIEQIRNDEWFQRSYVPVSLLEYEDVNLDDINAAFDETERAEQQCDNEDMGPLILNAFDLIILSQGLNLGTIFDRGQDSVKYQTRFVTQKPAKVVLSSMEVVAQSMGFKTHIRNYKMRVEGVSANKTSYFSVIMEIFEVAPTFYMVDIQKAAGDTGEYLKFYKNFCSNLEDIIWKPAHEATKSRISKTKSKRR* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0967 444 PANTHER - 2 441 - -
Vra5g0967 444 Gene3D Transferase(Phosphotransferase) domain 1 4 303 - -
Vra5g0967 444 Pfam NAF domain 303 361 IPR004041 GO:0007165
Vra5g0967 444 SUPERFAMILY Protein kinase-like (PK-like) 6 278 IPR011009 -
Vra5g0967 444 SMART serkin_6 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0967 444 Gene3D Kinase associated domain 1, KA1 304 426 - -
Vra5g0967 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Vra5g0967 444 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0967 444 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0967 444 CDD CIPK_C 307 422 - -
Vra5g0967 444 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Vra5g0967 444 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 441 - -
Vra5g0967 444 ProSiteProfiles NAF domain profile. 301 325 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0967 Vra-Chr5 15985394 15991379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0967 1 386 CBL-interacting serine-threonine protein kinases AT4G24400 82.171 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vra5g0967 Pkinase 9.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0967 - - gmx:100785444 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0967 5 15985394 15991379 Vra5g0967 5 15985394 15991379 ECH