Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0963 ATGTCCGGCCCAGGGGTACGGTTGCACATCCAAGATCATCATGTGGTGATGGATAATGGCATAGTCCAGGTTACGCTATCAAATCCAGGTGGGATTGTCACCGGGATACGATATAATGGTGTTGACAATTTGCTTGAAGTTCTAAACAAGGAATCTAATAGAGGGTACTGGGACCTTGTTTGGAGTGCGCCAGGAAGCAAAGGGATCTTTGATGTGATTCAAGGAACTTGTTTTAAAGTTATAGTTCAAAATGAGGAACAGGTGGAGCTTTCTTTCACAAGAATGTGGGATCCTTCTCTAGAGGGAAAATTTGTCCCCTTAAATATTGACAAAAGATTTATAATGCTCCGCGGTTCATCTGGCTTCTACTCTTACGGAATTTATGAGCACTTAAATGGATGGCCAGATTTTGATCTCGGTGAAACGAGGATTACTTTCAAGCTAAGAAAAGACAAGTTTCAATACATGGCTATGGCAGACAATAGGCGAAGAATTCTTCCTTATCCAGAAGATCGGTTACCTGGAAGATGCCAAACCTTGGGCTTCGCAGAAGCTGTCCTACTAACCAATCCCAAAGACCCACAATTGCAAGGAGAGGTGGATGACAAGTATCATTATTCATGTGCAAACAAGGATAATCAAGTTCATGGGTGGATATCTTTCAGTCCACCAGTAGGCTTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCTCAAACAAAATTTGACCTCACACGTAGGCCCCACCACACTTGCAATGTTTCTTAGTAGTCACTATGCGGGACAGGATTTGGTGCCTAAAATTAGAGGTGGTGAATCATGGAAGAAGGTTTTCGGTCCTGTATATATTTATCTCAATTCTGCACCAGTTGGTGACGACCCACTTTGGTTATGGGAGGATGCAAAAATACAGATGATGAATGAAGTTCAAAGTTGGCCATATCATTTCCCAGCTTCAGAGGATTTTTTAAAATCGGATCAGCGGGGCAACGTCAGTGGCAGATTACTTGTCTTAGACAAGTACATCTGCACAGACTTAATATCCGCAAATGGTGCTTATGTTGGCCTGGCCCCACCTGGAGATGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCGGATGAGAATGGATTTTTTACCATTAGAAATGTACGTCCAGGCGACTATAACCTTTTTGCTTGGGTGCCTGGCTTTGTTGGGGACTACAAATTTGTAGATTCTATGAAGATAACGCCAGGTTCCTACACTGAATTGGGTGAACTTGTATATGAGCCTCCAAGAGATGGTCCTACATTGTGGGAAATAGGTATTCCTGATAGATCTGCTGCGGAATTTTATGCTCCTGATCCCAATCCCCAATACATTAATAGGCTTTTTATCAACCATCCAGACAGGTTCAGGCAGTATGGATTGTGGGAAAGGTATACAGAATTGTACCCTGATGCAGATTTGGTTTACACAGTTGGTGTTAGTGACTATACGAAGGACTGGTTTTATGCGCAGGCTCCGAGGAAAAAAGAGGATAACACTCTTGAAGGGACCACCTGGCAAATCAAGTTCGAAGTCAGAAGCGTGGTTAAGGGAAGTACATACAAACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGATTAGAGTAAATGATCCCAATACTGCGCGACCCCTATTTACCACTGGATTAATAGGAAGGGACAACTCAATTGCAAGACATGGAATTCACGGAATCTATTGGTTTTACAATGTGAATATACCAGGTTCTCTTCTTATTGATGGCACAAATACCATATATTTTACGCAACCAAGATGCACCAGTCCCTTCCAAGGTATCATGTATGATTATATTCGTTTGGAAGGCCCACCTTGTGAAGGAATTTAA 1911 0.4275 MSGPGVRLHIQDHHVVMDNGIVQVTLSNPGGIVTGIRYNGVDNLLEVLNKESNRGYWDLVWSAPGSKGIFDVIQGTCFKVIVQNEEQVELSFTRMWDPSLEGKFVPLNIDKRFIMLRGSSGFYSYGIYEHLNGWPDFDLGETRITFKLRKDKFQYMAMADNRRRILPYPEDRLPGRCQTLGFAEAVLLTNPKDPQLQGEVDDKYHYSCANKDNQVHGWISFSPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSSHYAGQDLVPKIRGGESWKKVFGPVYIYLNSAPVGDDPLWLWEDAKIQMMNEVQSWPYHFPASEDFLKSDQRGNVSGRLLVLDKYICTDLISANGAYVGLAPPGDAGSWQRECKDYQFWTRADENGFFTIRNVRPGDYNLFAWVPGFVGDYKFVDSMKITPGSYTELGELVYEPPRDGPTLWEIGIPDRSAAEFYAPDPNPQYINRLFINHPDRFRQYGLWERYTELYPDADLVYTVGVSDYTKDWFYAQAPRKKEDNTLEGTTWQIKFEVRSVVKGSTYKLRVAIASATLAELQIRVNDPNTARPLFTTGLIGRDNSIARHGIHGIYWFYNVNIPGSLLIDGTNTIYFTQPRCTSPFQGIMYDYIRLEGPPCEGI* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0963 636 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 633 - -
Vra5g0963 636 CDD RGL4_M 331 430 IPR029413 -
Vra5g0963 636 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
Vra5g0963 636 Gene3D - 438 629 - -
Vra5g0963 636 SUPERFAMILY Starch-binding domain-like 374 428 IPR013784 GO:0030246
Vra5g0963 636 Pfam Polysaccharide lyase family 4, domain II 354 426 IPR029413 -
Vra5g0963 636 SUPERFAMILY Galactose-binding domain-like 437 629 IPR008979 -
Vra5g0963 636 CDD RGL4_N 6 298 - -
Vra5g0963 636 Gene3D - 328 427 - -
Vra5g0963 636 CDD RGL4_C 442 629 - -
Vra5g0963 636 Pfam Rhamnogalacturonate lyase family 9 200 IPR010325 -
Vra5g0963 636 Gene3D - 8 299 IPR014718 GO:0030246
Vra5g0963 636 SUPERFAMILY Galactose mutarotase-like 14 294 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vra5g0963 636 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0963 Vra-Chr5 15955131 15961349 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0963 1 632 Polysaccharide Lyase AT1G09910 70.728 0.0 958
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0963 K18195 - gmx:100814185 1238.79