Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0962 ATGCCGTTATTGGGGGTGCAACTTACTGTTCAAGATAATCATGTGGTGATGGAAAATGGCATACTAAAAGTCACTTTATCAAATCCTGGGGGAATTGTGACTGGAATACAGTACAATAACATCGACAACGTGCTTGAAGTTTTGAATGAAGAATCTAACAGAGGGTATTGGGACCTTGTCTGGAGCTCGCCGACAAGTACAGGAACCAGTGGTACATTTGATGTCATCAAAGGAACAGAGTTCCAAGTTATGGTTGAAAATGAGGACCAAGTTGAGGTATCCTTCACCAGGAAGTGGGACGTCTCTCTCGAGGGCAAGCTGGTTCCTTTAAACATTGACAAAAGGTTCATAATGCTTCGTGGTTGTTCGGGCTTCTACTCCTATGCAATTTATGAGCACTTACAGGAGTGGCCTGCTTTCAATCTTGACGAAACAAGAATTGCTTTCAAGCTTAGAAAAGACAAGTTCCATTATATGGCAATGGCTGATAATAGACAAAGAAACATGCCTCTTCCAGATGACAGATTACCACCTAAGGGCAAAGCCCTTGCCTACCCAGAAGCAGTTCTACTTGTCAATCCCATCGAACCAGAACTTAAGGGAGAGGTGGATGACAAGTACCAATATTCATGCGACAACAAAGACAACAAAGTTCATGGATGGATCTGCATGGATCCTGCAGTGGGATTCTGGCTTATTACGCCCACCGATGAGTTTCGATCTGGTGGGCCCCTCAAACAAAACTTAACTTCTCATGTTGGCCCCACCACGCTTGCCGTGTTTCTGAGTGCACATTATTCTGGAGAGGATTTGGTGCCTAAGTTTAATGCTGGTGAGGCATGGAAAAAAGTTTTTGGTCCTGTTTTCATTTATTTGAATTCTTCCTATGATGGAGGTGACCCCCTTAAGCTATGGGACGATGCTAAACAACAGATGTTGGTGGAAGTTCAAAGCTGGCCCTACAGTTTCCCTGAATCAGAGGATTTTGCTAAGTGGGACGAACGTGGTAATGTTAGTGGCAGGCTTCTGGTTAGAGAGAGGTGTATAAACGATGACTATATCTCAGCAAAAGGTGCTTATGTTGGCTTGGCTCCTCCAGGCGATGTGGGATCATGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCTAAAGCAGACGATGATGGCTACTTCTCGATCACCAATGTACGTGCAGGAGATTACAATGTTTACGCCTGGGTGCCTGGTTTTATTGGTGACTATAAATATGACGTAGTTATGAACATAACAGAAGGCTGTGAAATCGACCTTGGTGAGCTTGTGTATGAACCCCCTAGAGATGGTCCAACATTGTGGGAAATTGGCATTCCTGATCGAACAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCCAAATATATCAACAAACTTTTTGTCAATCATCCTGACAAGTTTAGACAGTATGGATTGTGGGAGAGATATGCAGAACTCTACCCTGACAAAGACCTGATCTACACAATTGGTGTCAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGACAACACATTTCAAGGAACCACTTGGCAGATCAAGTTTCAACTTGATACGGTGAACAAAACCAGTAGCTATAAACTGCGGGTGGCTTTGGCATCTGCAACATTATCTGAACTTCAGGTTCGAGTTAATAATCCAAAGAGTCCTCGTCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCGATCGCAAGGCATGGAATTCATGGACTTTATTGGCTTTACAATGTAGAGATTGCAGGAACTCAATTTGTTGAAGGAGATAATACCATCTTTTTGACACAGAGCAGAGGAAATAGTCCATTTCAGGCAATTATGTATGATTATATTCGTCTGGAAGCTCCACCATCTTCTACCTTCAATAACACAAAGTCATAA 1935 0.4284 MPLLGVQLTVQDNHVVMENGILKVTLSNPGGIVTGIQYNNIDNVLEVLNEESNRGYWDLVWSSPTSTGTSGTFDVIKGTEFQVMVENEDQVEVSFTRKWDVSLEGKLVPLNIDKRFIMLRGCSGFYSYAIYEHLQEWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRLPPKGKALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDNKVHGWICMDPAVGFWLITPTDEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFNAGEAWKKVFGPVFIYLNSSYDGGDPLKLWDDAKQQMLVEVQSWPYSFPESEDFAKWDERGNVSGRLLVRERCINDDYISAKGAYVGLAPPGDVGSWQRECKNYQFWAKADDDGYFSITNVRAGDYNVYAWVPGFIGDYKYDVVMNITEGCEIDLGELVYEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLFVNHPDKFRQYGLWERYAELYPDKDLIYTIGVSDYTKDWFFAQVTRKKDDNTFQGTTWQIKFQLDTVNKTSSYKLRVALASATLSELQVRVNNPKSPRPLFSSGLIGRDNSIARHGIHGLYWLYNVEIAGTQFVEGDNTIFLTQSRGNSPFQAIMYDYIRLEAPPSSTFNNTKS* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0962 644 SUPERFAMILY Starch-binding domain-like 373 421 IPR013784 GO:0030246
Vra5g0962 644 Gene3D - 333 425 - -
Vra5g0962 644 Pfam Polysaccharide lyase family 4, domain II 357 429 IPR029413 -
Vra5g0962 644 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 637 - -
Vra5g0962 644 Pfam Polysaccharide lyase family 4, domain III 443 631 IPR029411 -
Vra5g0962 644 CDD RGL4_C 445 632 - -
Vra5g0962 644 Pfam Rhamnogalacturonate lyase family 9 203 IPR010325 -
Vra5g0962 644 SUPERFAMILY Galactose-binding domain-like 440 632 IPR008979 -
Vra5g0962 644 Gene3D - 5 302 IPR014718 GO:0030246
Vra5g0962 644 Gene3D - 441 632 - -
Vra5g0962 644 CDD RGL4_N 8 304 - -
Vra5g0962 644 CDD RGL4_M 334 433 IPR029413 -
Vra5g0962 644 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 637 - -
Vra5g0962 644 SUPERFAMILY Galactose mutarotase-like 8 295 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0962 Vra-Chr5 15949645 15954078 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0962 1 634 Polysaccharide Lyase AT1G09890 71.226 0.0 961
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0962 K18195 - gmx:100814721 1254.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0962 5 15949645 15954078 Vra5g0962 5 15949645 15954078 ECH