Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0961 ATGGACTTCACTAATCACTTTCTGTTCTTGATGCTGCAATTCCTCGTGGTTCTGGGAGGTGATACCAAACCAGGAGTACGATTGGATATTCAAGATGAACATGTGATAATGGATAATGGCATAGTCCAGGTCAACTTATCAAATCCTGAAGGAATTGTCACCGGAATTCGATATAATGGCATCGACAATTTGCTGGAAATTCTCAACGAAGAATACGACAGAGGGTACTGGGACATTGTTTGGGACGAAGGTGGAGAAAATAGAACAAAAAAAGGAGCAAAGGGAAAGGGTAGATTTGACAGAATGGAAGCCACAAATTTAACGGTGATAGTAGAAAACGAGGAACAAGTAGAGCTATCTTTCACCAGAAAATGGAATGAATCTTTTCAGGGGAAGCTTCCGCCACTCAACATTGACAAAAGGTTTATATTGCTTCGTGGTTCCTCTGGGTTCTACACCTATGCCATTTACGAGCATTTGAAGGAATGGCCAGCTTTCGATATCGACAATACAAGGATCGCATTCAAACCTAGGAAAGACAAGTTCCATTACATGTCTATAGCGGACAACAGACAGAGATTTATGCCTCTGCCCGATGACCGGATACCCCCAAGAGGTCAAGTTCTTGCCTACCCTGAGGCTGTGCGTCTTGTTGACCCCGTGGAGCCCGAATTCAAAGGCGAGGTGGATGATAAATATGAGTATTCATGCGAGAGTCGATACAATCGTGTTCACGGCTGGATGAGCATTGATCCATTGAATTCCACCGGATTCTGGCTAATTACGCCAAGCTATGAGTTCCGATCTGCTGGACCCCTCAAGCAATATATTACTTCTCACGTTGGCCCCACCACACTCTCTGTATTTCATAGCACGCATTATTCAGGCGCGGATCTGATAATGAAATTTGGGCCTGATGAGCCGTGGAAGAAAGTCTATGGGCCCATATTCTTATACCTTAATTCTCTATCCAACGGGGTTAGCCCAATCAAACTCTGGGAGGACGCCAAACAACAGATGGTCAATGAAGTTGAGAGCTGGCCCTATACATTTCCAGCTTCTGAGGACTTTCTCTCATCTGAGCAACGAGGCAAAGTCCAAGGTAGATTGCTTGTCCGAGACAGGAAGGTCAGTGATGCATTCATCCCAGTTAGTGGTGCTTATGTGGGACTAGCAGCCATAGGAGATGTTGGATCTTGGCAACGAGAATGTAAGGGTTATCAATTTTGGACCATTACTGATGATAAAGGCTATTTCTCAATTATTAACATACGCCCTGGGGACTATAATCTCTACTCCTGGGTCACTGGATACATTGGTGATTATCAATTCGATAAAATCATCAACGTAACTTCAGGTTGTGAAATTAATGTGCATGAGCTTGTTTATGAGCCACCAAGAGATGGTCCTACGTTGTGGGAAATAGGCATCCCTGATCGTTCAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCCATGTACATTAACAAACTCTATGTCGACCATACAGACAGGTTTAGGCAATATGGTCTGTGGGAAAGATACGCTGATTTGTATCCAAATAAAGACCTAGTTTACACTGTTGGCGTTAGTGACTACAGAAAAGATTGGTTCTTTGCTCAGGTTAATAGGAAGAAAGATAATGGCACTTATCAAGGAACTACATGGCAAATTAACTTCAACCTTGATCGAGTGAATACCAATGGAAGCTACACATTGCGAGTGGCTCTGGCATCTGTGCATAGTGCAGAATTACAGATTCGGATAAACAAATTAGAAGCAGATCCACCTTTATTTTCAAGTGGAGTGATTGGAAAGGAGAATACAATAGCTAGACATGGAATTCACGGTCTCTATTGGCTATTCAGCATCGATGTAGATGGCACTCTTCTTGTGCAGGGGAACAATACCATCTTTCTAACGCAACCGATGAACACAAGTCCTTTTATAGGAATTATGTACGACTATATTCGTTTAGAATATAAAAGCTGA 1992 0.4287 MDFTNHFLFLMLQFLVVLGGDTKPGVRLDIQDEHVIMDNGIVQVNLSNPEGIVTGIRYNGIDNLLEILNEEYDRGYWDIVWDEGGENRTKKGAKGKGRFDRMEATNLTVIVENEEQVELSFTRKWNESFQGKLPPLNIDKRFILLRGSSGFYTYAIYEHLKEWPAFDIDNTRIAFKPRKDKFHYMSIADNRQRFMPLPDDRIPPRGQVLAYPEAVRLVDPVEPEFKGEVDDKYEYSCESRYNRVHGWMSIDPLNSTGFWLITPSYEFRSAGPLKQYITSHVGPTTLSVFHSTHYSGADLIMKFGPDEPWKKVYGPIFLYLNSLSNGVSPIKLWEDAKQQMVNEVESWPYTFPASEDFLSSEQRGKVQGRLLVRDRKVSDAFIPVSGAYVGLAAIGDVGSWQRECKGYQFWTITDDKGYFSIINIRPGDYNLYSWVTGYIGDYQFDKIINVTSGCEINVHELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPMYINKLYVDHTDRFRQYGLWERYADLYPNKDLVYTVGVSDYRKDWFFAQVNRKKDNGTYQGTTWQINFNLDRVNTNGSYTLRVALASVHSAELQIRINKLEADPPLFSSGVIGKENTIARHGIHGLYWLFSIDVDGTLLVQGNNTIFLTQPMNTSPFIGIMYDYIRLEYKS* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0961 663 Gene3D - 469 660 - -
Vra5g0961 663 CDD RGL4_N 34 322 - -
Vra5g0961 663 SUPERFAMILY Galactose-binding domain-like 468 661 IPR008979 -
Vra5g0961 663 Pfam Polysaccharide lyase family 4, domain III 471 659 IPR029411 -
Vra5g0961 663 CDD RGL4_C 473 660 - -
Vra5g0961 663 SUPERFAMILY Starch-binding domain-like 360 458 IPR013784 GO:0030246
Vra5g0961 663 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 662 - -
Vra5g0961 663 Gene3D - 138 313 IPR014718 GO:0030246
Vra5g0961 663 Pfam Rhamnogalacturonate lyase family 30 229 IPR010325 -
Vra5g0961 663 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 1 662 - -
Vra5g0961 663 Gene3D - 359 459 - -
Vra5g0961 663 Pfam Polysaccharide lyase family 4, domain II 385 457 IPR029413 -
Vra5g0961 663 CDD RGL4_M 362 461 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0961 Vra-Chr5 15937584 15942565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0961 26 663 Polysaccharide Lyase AT1G09890 65.055 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0961 K18195 - gmx:100786488 1241.1