Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0960 ATGGCTCCTGCACCGAACCACTTCCTCCTCTTCGCTCTCCTTCTACTCCTTACATACGCAGCACACACCAGAGAAACTCCACCTCCCACTCCCCAACGAATCATTGCACCACCGCCGCCCGACAACTACACTGACACCTCGCCGCCTTTCAGACCAGGCATAGCGGTGGTCGTATGCGTTTTGACCACCATAATCTCCCTCACCTCGCTCCTCCTTCTTTACATCAAACACTGCAACGGCGGCACCATCCACAGCGGCGGGAGCTCGATTCCGTGGACCGTGGCGCCGTTCTCCGGGAGAAAGAACTCCGGCATTGACCGGTCCGTAGTGGAATCGCTTCCCGTTTTCAGATTCGGAGCGCTGCGGGGACAAAAGGAAGGGCTGGACTGCGCCGTGTGCCTGACGAAGTTCGAGGCGGCGGAGGTTCTCCGGCTGTTGCCGAAATGCAAGCACGCGTTCCACGTCGAGTGCGTGGACACGTGGCTGGACGCGCATTCCACGTGTCCTCTGTGCCGGTACCGCGTGGATCCGGAGGACATTCTTCTGGTGGAGGACACAAAGCCTTTCCGGTGCCAAACTCAGCCACAGCGGAACAGCCAGAACAACAACAGGAACCAGGAACGCGCGCGGTTGAATATGGACGTGGAGAAGCAGGAGATTGGGCGGAGGCATTCGTCGGTGGGGGAGAGGGGAACGGAGGAGCAGAGTCGGAGATGGACGACGTCGTTTAGGAGGTCGTTGGATAGCGCCACATCGAGGAAAAAGAACGAGAGCGTTGGTGTTGTTGGGTTTGGTTGGTTTGTACGTGGCAGAAAAGACGGGATGTTGTTGACGCAAGAAACGGAGAGAGAGGGAAACAGGACAAGCGCGGAACGGAGGTTGGAACACCGGATCATTGTCTCCCCGGGCCCGGAGGCAGGCCCAGGAAAAATGAAAATGAATGGGGTCCAGCAGAGATGGAGCGACGTGCAAGCTTCGGACCTGCTGTATCTGACGTCGGAGATGATAATGAGCGAGGCGCAATGGAACACGCGCGGAGGAGGAAGACGAAGGGGGACGCGCCGTGCAAATGATGACGAGGTTGAGGACAGTTGGAGTGGCAGAGGGATAATAAATTCGAGAAGTGTGTCTGAGATCACGGGATTGAGCAGGTTCTCCAGCAATAGCAATAATAATAACGAGGAGGACACAGAGAGACAGAGAGACAGAGAGTGGGAGCAACAAGGACAAGGACATGGAGAGAGAGAAAGAGAAAGAGAAAGAGAACAGGGTCTGGTGAGAAGGTGGTTGGGTTGGATTTCCAAGTCTCACACACATTCCCAAACCCAACCATCGGTACGGTAG 1344 0.5625 MAPAPNHFLLFALLLLLTYAAHTRETPPPTPQRIIAPPPPDNYTDTSPPFRPGIAVVVCVLTTIISLTSLLLLYIKHCNGGTIHSGGSSIPWTVAPFSGRKNSGIDRSVVESLPVFRFGALRGQKEGLDCAVCLTKFEAAEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVEDTKPFRCQTQPQRNSQNNNRNQERARLNMDVEKQEIGRRHSSVGERGTEEQSRRWTTSFRRSLDSATSRKKNESVGVVGFGWFVRGRKDGMLLTQETEREGNRTSAERRLEHRIIVSPGPEAGPGKMKMNGVQQRWSDVQASDLLYLTSEMIMSEAQWNTRGGGRRRGTRRANDDEVEDSWSGRGIINSRSVSEITGLSRFSSNSNNNNEEDTERQRDREWEQQGQGHGEREREREREQGLVRRWLGWISKSHTHSQTQPSVR* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0960 447 CDD RING-H2_EL5_like 129 172 - -
Vra5g0960 447 SUPERFAMILY RING/U-box 124 177 - -
Vra5g0960 447 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 439 - -
Vra5g0960 447 PANTHER RING-H2 FINGER PROTEIN ATL43 20 439 - -
Vra5g0960 447 MobiDBLite consensus disorder prediction 394 422 - -
Vra5g0960 447 MobiDBLite consensus disorder prediction 191 208 - -
Vra5g0960 447 MobiDBLite consensus disorder prediction 351 365 - -
Vra5g0960 447 MobiDBLite consensus disorder prediction 191 254 - -
Vra5g0960 447 MobiDBLite consensus disorder prediction 209 241 - -
Vra5g0960 447 Pfam Ring finger domain 129 172 IPR001841 -
Vra5g0960 447 MobiDBLite consensus disorder prediction 381 422 - -
Vra5g0960 447 MobiDBLite consensus disorder prediction 342 365 - -
Vra5g0960 447 SMART ring_2 130 171 IPR001841 -
Vra5g0960 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 179 IPR013083 -
Vra5g0960 447 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0960 Vra-Chr5 15934083 15936132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0960 42 440 C3H Transcription Factor Family AT5G05810 44.471 3.04e-83 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0960 K19041 - gmx:100794083 430.639