Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0958 ATGAAAGGAGAATACGTAGACCAACAACAACATCCTAAAGCCGAAACACCACCTCCTATGTTCTCAAAGCTTCAACCTCAACACCATCCTTTCCAACACCACCCCTTCCAACTCTCCGCCGAGGACGACAACCGTGCCATCGTCGCCACACCCACTACTGCGCAGAAGCCCAACTCATCCGGCGGTGACGGTGCCACCATCGAGGTCGTACGGCGTCCCAGGGGCCGTCCTCCCGGCTCCAAGAATAAGCCCAAGCCACCTGTCATCATAACCCGAGACCCTGAACCTGCTATGAGCCCCTACATTTTAGAAGTTTCTGGAGGCAGCGACGTGGTTGAAGCCATCGCGCAGTTCAGTCGCCGCAAGAATATGGGCATCTGTGTGCTCACTGGTTCCGGGACTGTAGCCAGCGTCACCCTCCGTCAACCCTCCACCACTCCCGGCGCCACCGTTACTTTTCAGGGCCGTTTCGATATCCTCTCCGTCTCCGCCACCTTCCTTCCGCAGCAATCCGGTGCGTCTCCGGCGGTTCCCAACGGGTTTGCCATCTCGCTCTCTGGACCGCAAGGGCAGATCGTCGGAGGAATGGTTGCTGGTGGGTTGATGGCTGCGGGAACTGTGTTCGTGATCGCAGCTTCGTTCAACAACCCGGCGTATCATAGGCTGCCGCCGGAGGATGAAGGCGCATCCGCCGGCGATGGACATTCGCCGCCAATCTCTGGTGGCGGAGAAAGCGGGCATGGGCAGGCGGAGTCGTGTGGAATGTCCATGTACAGCTGTCACTTGCCTTCCGATGTGATTTGGGCTCCGACGGCCAGAGCACCACCGCCACCACCACCTTACTGA 846 0.5898 MKGEYVDQQQHPKAETPPPMFSKLQPQHHPFQHHPFQLSAEDDNRAIVATPTTAQKPNSSGGDGATIEVVRRPRGRPPGSKNKPKPPVIITRDPEPAMSPYILEVSGGSDVVEAIAQFSRRKNMGICVLTGSGTVASVTLRQPSTTPGATVTFQGRFDILSVSATFLPQQSGASPAVPNGFAISLSGPQGQIVGGMVAGGLMAAGTVFVIAASFNNPAYHRLPPEDEGASAGDGHSPPISGGGESGHGQAESCGMSMYSCHLPSDVIWAPTARAPPPPPPY* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0958 281 MobiDBLite consensus disorder prediction 46 62 - -
Vra5g0958 281 MobiDBLite consensus disorder prediction 1 94 - -
Vra5g0958 281 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 15 279 IPR014476 GO:0003680
Vra5g0958 281 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 216 IPR005175 -
Vra5g0958 281 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 229 - -
Vra5g0958 281 ProSiteProfiles PPC domain profile profile. 95 235 IPR005175 -
Vra5g0958 281 MobiDBLite consensus disorder prediction 221 250 - -
Vra5g0958 281 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 15 279 - -
Vra5g0958 281 CDD DUF296 100 214 IPR005175 -
Vra5g0958 281 Gene3D - 99 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0958 Vra-Chr5 15905952 15907306 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0958 1 277 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 57.860 9.98e-101 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0958 - - gmx:100788098 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0958 5 15905952 15907306 Vra5g0958 5 15905952 15907306 ECH