Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0946 ATGGCACCCAGTTTTGACTGTGTTTCGAGTCTCCTTTGCTCAGAGGACAGCACCGTTTTCGACGAGAGTCATTATGGGGGTACGATGATGGGGGTGTGCGAGGACACGTGGCGTTCCTGGAGGCACCGCTTCGATGAACCGGATGAGTTGCCATTGCTGAGTGATGAGTGCTTGGCGATGATGGTGGAAAGAGAGTGCCAACTCTGGCCTGGTTTGCGATACTTCAATAAGCTTCAGACTGGAAATTTGGACTGTGGTGCCAGAAAGGAGGCCATTGATTGGATTCACAAGGTCCGATCGCATTTCGGTTTTGGTCCTCTCTGTGGATATCTATCTATAAATTACTTGGATCGATTCCTTTCTGCATATGAATTACCCAAGGGAAGAGTTTGGACAATGCAATTGTTGGCTGTGGCGTGTTTAACTCTTGCAGCCAAAGTGGATGAGACAGAAGTCCCAGTGTCTCTTGATTTACAGGTGGGTGAATCAAAGTTTGTATTTGAGGCTAAGACCATCCAGAGAATGGAGCTTCTAGTACTAACCACATTGAAGTGGAGAATGCAAGCAATCACTCCTTTCACCTTCCTTGATTACTTCCTTTGCAAGATCAATGGTGATCAGAGTCCATTGAAGTCTGCAATCATGCGATCTATCCAACTAATATCAAGCACTGCAATAGGAATTGACTTCTTGGAATTCAAACCATCAGAGATTGCTGCAGCAGTGGCCATGAATGTCATGGGGGAAACCCAAACAGTTGACACAGGGAAAGCAATTTCTGTGCTGATTCAACACGTAGAAAAGGAGAGACTATTGAAGTGCATTAAAATGATGCAAGAGTTGTCATCAAACAGTGGGACTGCGAAGGATTCAAGTGATTCTGTGACTTGCCTACCCCAAAGCCCAATAGGTGTGCTAGATGCATTGTGCTTCAGCCACAAAAGTGATGACACAAATGCTGCTTCATGTGCTAACTCTTCACATAGTACTCCTGATGCTAAAAGGAGGAAGTTAAACAAAACCTGTGGAGCAGAGCTATTGTAG 1044 0.4521 MAPSFDCVSSLLCSEDSTVFDESHYGGTMMGVCEDTWRSWRHRFDEPDELPLLSDECLAMMVERECQLWPGLRYFNKLQTGNLDCGARKEAIDWIHKVRSHFGFGPLCGYLSINYLDRFLSAYELPKGRVWTMQLLAVACLTLAAKVDETEVPVSLDLQVGESKFVFEAKTIQRMELLVLTTLKWRMQAITPFTFLDYFLCKINGDQSPLKSAIMRSIQLISSTAIGIDFLEFKPSEIAAAVAMNVMGETQTVDTGKAISVLIQHVEKERLLKCIKMMQELSSNSGTAKDSSDSVTCLPQSPIGVLDALCFSHKSDDTNAASCANSSHSTPDAKRRKLNKTCGAELL* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0946 347 Gene3D - 71 188 - -
Vra5g0946 347 SMART cyclin_7 93 181 IPR013763 -
Vra5g0946 347 SUPERFAMILY Cyclin-like 172 282 IPR036915 -
Vra5g0946 347 CDD CYCLIN 88 180 IPR013763 -
Vra5g0946 347 SUPERFAMILY Cyclin-like 45 187 IPR036915 -
Vra5g0946 347 Pfam Cyclin, C-terminal domain 190 289 IPR004367 -
Vra5g0946 347 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 340 - -
Vra5g0946 347 PANTHER CYCLINS 1 340 IPR039361 -
Vra5g0946 347 Pfam Cyclin, N-terminal domain 57 187 IPR006671 -
Vra5g0946 347 Gene3D - 59 277 - -
Vra5g0946 347 SMART Cyclin_C_2 190 300 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0946 Vra-Chr5 15771820 15774441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0946 61 323 Core Cell Cycle Gene Families AT2G22490 49.077 5.02e-82 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0946 K18810 - gmx:547739 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0946 5 15771820 15774441 Vra5g0946 5 15771820 15774441 ECH