Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0943 ATGGGTTACTTCTCTTGTAATGCCCAATCCGCAATCGCCACCTGCGACCCTCACTTCAAGAAGCACAAACCCCTCCCTGCCAAACCAATACGCCACTTCAACTACGCCGAAATCTCCGCCGCAGCTTCTGCCTTCTCCGCCGATACCTTTCTCGGCAAAGGCAGCCATGGCAGAGTCTACAAAGCTACCCTCGACGGCGGAAAGCTCCTTGCCGCCGTCAAAACAACTAAACTGGTCTCTGCTTCCAAGAACCACTCCACTAAATGCACCGGCTGCGGCAACTGCACCAGTCCCGTGGAGAACGAGATCGAGATCCTCTCTCAAGTTCCGAGCCCCCGCGTGGTGAACCTCATCGGCTTCAGCACCGACCCAGACGGTAACAAATTAATCGTAGTTGAATACATGCCCAACGGTTCGCTCCACGATCTATTACATTCCGTTAGAAAACCGCCCGGTTGGAACCGGAGGATCCGGTTCGCGGTTCAGGTTGCGAAAGCGGTTCGCGAATTGCACTCTGCCAACCCTCCGGTTATTCACCGCGACGTTAAGTCTTCCAATGTTTTAATTGACGAGAGATGGAACGCGAGGCTCGGTGACTTCGGCCTTGCGTTAAGGGGACACGTGGAGGACGTTCGCGTCAAGTGCACGCCGCCGGCGGGAACGTTAGGGTACCTCGACCCGTGCTATCTGGCGCCGGAGGATCTCAGCGCCAAGAGCGACGTCTTCAGCTTCGGGATCTTACTGCTGGAGATCATCAGCGGCCGGAACGCCATCGACGTCAATTACAGCCCTCCCTCTATTGTGGACTGGGCGGTGCCGCTGATCAAGCTCGGCGACTTCGCCGGAATCTGCGACCGCCGGATCGGAACACCGACGGACCCCGCCGTGGTGCGGCAGCTGGCGGTGCTTGCTGCCAGATGCGTGAGGTCGAAGGCCGAGAAGCGGCCGTCCATGACGGAGGTTGTGGAGTGTCTGAATCTGGCAAGGAAGAGGATTCGCGCGTCCCCGGTGTGGATGTCTCTGCGGCGGCGCGTGGCGCGTATGGAGAGCGCGGTGCCGGTGGTGGCGTGGGAGGAGTGTGATGATAATAGTATTAATGATTGTGATAGGAGTGAGAAATTTGTGAGCATGGTGAAAGGTGGGAGTGGGAGCAGGAGGAAGGGGAAAGTATCCAGTGTGTGGGGTGTAGGGTATGGGAGTGAAGCGTCCAATAATAATAAAGTGATAAGGTCAAAGTCCATTGGTTCGGTGAGAGGGAGCTGGGTTAAAATGCAGGCACAGCAAAGCGAGGAGCAGGGATTTGGGAGGAGGAAGGTGAGGTTAAAAAAGTCAAAATCTTTGGGGGTTTTGCAAGGTTCTGTACTTTCACATTACAGTGAGAATAATAACAGTTATTATAGTTATAATAAGAAGAAGAAGAACAAGAATAATAATGATGATGATGATGATGATGATGTATCAGTAGTAATTGGGTCTGCAATGGCAAAGTTGGTTGTTACAGAAAAGTCAGAAAAGAAAATGGTGGAAAAGCCGTTAGTGAAATTGCATGATGAGAGTGGGAGTATGATTTGA 1572 0.5305 MGYFSCNAQSAIATCDPHFKKHKPLPAKPIRHFNYAEISAAASAFSADTFLGKGSHGRVYKATLDGGKLLAAVKTTKLVSASKNHSTKCTGCGNCTSPVENEIEILSQVPSPRVVNLIGFSTDPDGNKLIVVEYMPNGSLHDLLHSVRKPPGWNRRIRFAVQVAKAVRELHSANPPVIHRDVKSSNVLIDERWNARLGDFGLALRGHVEDVRVKCTPPAGTLGYLDPCYLAPEDLSAKSDVFSFGILLLEIISGRNAIDVNYSPPSIVDWAVPLIKLGDFAGICDRRIGTPTDPAVVRQLAVLAARCVRSKAEKRPSMTEVVECLNLARKRIRASPVWMSLRRRVARMESAVPVVAWEECDDNSINDCDRSEKFVSMVKGGSGSRRKGKVSSVWGVGYGSEASNNNKVIRSKSIGSVRGSWVKMQAQQSEEQGFGRRKVRLKKSKSLGVLQGSVLSHYSENNNSYYSYNKKKKNKNNNDDDDDDDVSVVIGSAMAKLVVTEKSEKKMVEKPLVKLHDESGSMI* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0943 523 Gene3D Transferase(Phosphotransferase) domain 1 135 338 - -
Vra5g0943 523 SMART serkin_6 45 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0943 523 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
Vra5g0943 523 ProSiteProfiles Protein kinase domain profile. 45 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0943 523 MobiDBLite consensus disorder prediction 466 485 - -
Vra5g0943 523 ProSitePatterns Protein kinases ATP-binding region signature. 51 74 IPR017441 GO:0005524
Vra5g0943 523 Pfam Protein tyrosine and serine/threonine kinase 49 325 IPR001245 GO:0004672|GO:0006468
Vra5g0943 523 SUPERFAMILY Protein kinase-like (PK-like) 26 325 IPR011009 -
Vra5g0943 523 PANTHER - 1 476 - -
Vra5g0943 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Vra5g0943 523 PANTHER OS01G0750732 PROTEIN 1 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0943 Vra-Chr5 15712984 15715027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0943 31 336 Receptor kinase-like Gene Family AT3G59420 40.193 2.51e-67 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vra5g0943 PK_Tyr_Ser-Thr 1.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0943 - - gmx:100799382 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0943 5 15712984 15715027 Vra5g0943 5 15712984 15715027 ECH
Vra6g1275 6 23833006 23834852 Vra5g0943 5 15712984 15715027 PCT