Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0941 ATGGAATTTGACGACCACGAAGACCAGGAGGAGGAAGAAGAGGAAGAGGAGGAGGAAGAGGAAATGGGATTCTCGGTGCCGGCGCCGGGTTACGATTCCTTCGGAAACGCGGCGCCCAGGTCTAAAATGAGCGCAGCCGAGGGACTTCCGGCCACCGTTAACTCCGGTCGAAAAAGCGGCTCGGCGGGGACGAGCAGATACAGAGAATGTCAGAAGAATCATGCCGTCAGCATCGGCGGTCACGCCGTCGATGGCTGCTGCGAGTTCTTGGCCGCGGGAGAGGAAGGCACGCTGGAGGCCGTAATTTGCGCGGCCTGTAATTGCCACCGCAATTTTCACCGCAAGGAGATCGACGGCGAAATCAGCCCGTACCAACTGCGCTCGCAGCCGCAGCCGCAGCCTCAACCGCTGCATCCTCAGTATCACCACCAATTCTCCCCTTACTACCACCGCGGGCCACCACCTTCCTCCGCGGGATACCTCCACCCCCACCACCTGTTAACCACTCCGGTGTCGCAGCACCGGCCTTTGGCTCTACCACCGCTGGCTTCGGGAGGAGTGTTCAGTAGAGAAGAGGAGGACATGTCAAACCCCAGCTCGAGCGGCGGCGGAGGTGGCGGTTTTGGTGGTGGTGGTAGCGGCAGTGGAACGAAGAAGAGGTTTAGGACAAAATTCACGCAGGAGCAGAAGGATAAGATGCTGGCATTTGCGGAGAAGCTAGGGTGGAGAATTCAGAAGCACGACGAAGGTGCCGTGGAACAATTCTGCGCTGAAACTTGTGTGAAGAGACACGTGCTGAAGGTCTGGATGCACAATAACAAACACACTCTTGCTAATTCAGAGCAACGTTCAGCTGGGAATGGATCGAATCACTTGAACAGCTCCACCATAATTGAGAATTCTGAACTCTCTTAA 915 0.565 MEFDDHEDQEEEEEEEEEEEEMGFSVPAPGYDSFGNAAPRSKMSAAEGLPATVNSGRKSGSAGTSRYRECQKNHAVSIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGEISPYQLRSQPQPQPQPLHPQYHHQFSPYYHRGPPPSSAGYLHPHHLLTTPVSQHRPLALPPLASGGVFSREEEDMSNPSSSGGGGGGFGGGGSGSGTKKRFRTKFTQEQKDKMLAFAEKLGWRIQKHDEGAVEQFCAETCVKRHVLKVWMHNNKHTLANSEQRSAGNGSNHLNSSTIIENSELS* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0941 304 MobiDBLite consensus disorder prediction 277 304 - -
Vra5g0941 304 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 37 278 - -
Vra5g0941 304 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 218 274 IPR006455 -
Vra5g0941 304 SUPERFAMILY Homeodomain-like 205 276 IPR009057 -
Vra5g0941 304 MobiDBLite consensus disorder prediction 1 64 - -
Vra5g0941 304 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 37 278 - -
Vra5g0941 304 MobiDBLite consensus disorder prediction 127 219 - -
Vra5g0941 304 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 67 116 IPR006456 -
Vra5g0941 304 MobiDBLite consensus disorder prediction 1 23 - -
Vra5g0941 304 Gene3D - 208 281 - -
Vra5g0941 304 Pfam ZF-HD protein dimerisation region 65 117 IPR006456 -
Vra5g0941 304 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 66 117 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0941 Vra-Chr5 15696987 15698603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0941 14 277 ZF-HD Transcription Factor Family AT4G24660 48.881 4.18e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vra5g0941 ZF-HD_dimer 9.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0941 - - gmx:100794438 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0941 5 15696987 15698603 Vra5g0941 5 15696987 15698603 ECH
Vra6g1277 6 23899523 23904528 Vra5g0941 5 15696987 15698603 PCT