Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0933 ATGAACACAAACAGAGCCGAAGCCGAACGCTTGCTCGCCATCGGCGAGAAGCTGCTCCAGAGCCGTGACCTGAGCGGCTCCCGCGACTTCGCCATTCTCGCGCAGGAAGCCGAGCCGCTCCTCGAAGGCTCCGACCAGATCCTCGCCATCGTCGACGTCCTCGTCGCCGCCGAGAAGCCGATCCACGACAGCCACCTCGATTGGTACGCCATTCTCCAAGTGGATCGCACGTGCCAGAACCTCGATCTCATCAGAAAACAGTACCGCAGACTCGGTCTTCTCCTTCACCCTGACAAGAACCCTTTCTCCCTAGCCGACCACGCTTTCAAGTTTGTCACCGATGCATGGGCCGTTTTATCCGACCCGGTTCAGAAAGCCTTGTACGACCGAGACGTCGCCGGTTCGGTCGAAACGGCGAGTTTCTGGACTGCATGTCCGTACTGTTACTTTCTCTTCGAGTACCCTGTGGATTGCGAGGGGTGTTGCCTGAGGTGCCAGAATTGCGAGAGGTCGTTCCACGGGCTTTCGATTCCGTCGCTCCCTCCTCTCGTGCCGGGCCAGGAGGCCTATTATTGTAACTGGGGGTGCTTGCCCATGGGCTTTGTGTTTGGAACTTTGGGCTCCAATGGGCCTGGGTGTGTGCCTGAGAATGGCCCGGAGGCTGTTTCGAATGGGGCTGCCTCGGAGTTGGGTTCTCGTTCTGCGCGGAAGAAGGGAAGGCCTCAAAAGGGGGTGTGA 738 0.5894 MNTNRAEAERLLAIGEKLLQSRDLSGSRDFAILAQEAEPLLEGSDQILAIVDVLVAAEKPIHDSHLDWYAILQVDRTCQNLDLIRKQYRRLGLLLHPDKNPFSLADHAFKFVTDAWAVLSDPVQKALYDRDVAGSVETASFWTACPYCYFLFEYPVDCEGCCLRCQNCERSFHGLSIPSLPPLVPGQEAYYCNWGCLPMGFVFGTLGSNGPGCVPENGPEAVSNGAASELGSRSARKKGRPQKGV* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0933 245 SUPERFAMILY Chaperone J-domain 62 131 IPR036869 -
Vra5g0933 245 Gene3D DnaJ domain 55 144 IPR036869 -
Vra5g0933 245 Pfam DnaJ domain 67 129 IPR001623 -
Vra5g0933 245 PANTHER CHAPERONE DNAJ-DOMAIN PROTEIN 1 228 - -
Vra5g0933 245 ProSiteProfiles dnaJ domain profile. 67 132 IPR001623 -
Vra5g0933 245 CDD DnaJ 67 121 IPR001623 -
Vra5g0933 245 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
Vra5g0933 245 PRINTS DnaJ domain signature 69 87 IPR001623 -
Vra5g0933 245 PRINTS DnaJ domain signature 88 103 IPR001623 -
Vra5g0933 245 PRINTS DnaJ domain signature 104 124 IPR001623 -
Vra5g0933 245 MobiDBLite consensus disorder prediction 221 245 - -
Vra5g0933 245 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 228 - -
Vra5g0933 245 SMART dnaj_3 66 124 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0933 Vra-Chr5 15631922 15633113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0933 2 207 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 55.459 1.02e-83 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0933 - - gmx:100802055 427.172