Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0931 ATGTTGTGCTCATCGCGTAACCTTGGACTTCATTTCACTTCAATTGGACTGTCTCGCGACGTTAGGCTGTACAGCAATCATGGAAGCTGTTGCTTTTATCAGTTTGGTGGTGGTATACCTACAATCATGAGGAGTTTGACAAGGAGAGCGATCATGAGGAGTTTGACAAGGAGATCATTGATGGTGACGACCATGGACATGGTGGCAGTGTCAAGGTCATATAATATAGCAGGAAAACCAATTGCAATTCCATTCATCCCTGCCCTTGGTATTATTGGGTTTGCTGTTTTTGGTCTCGAGCCTCTTGTGCGCCTGAGCAGGAAGATGTTTCGCCAAGAAAGTACTGATAGAAGTTGGAAGAAAAGTAGTTCATATTATATTTTGACATCTTATTTTCAACCTATGCTGCTGTGGACTGGAGTGATGCTCATCTGCAGGGATTTAGATCCACTAGTCCTACCATCAGAAACTAGTCAGGCTATGAAACAACGGCTGCTGAGTTTTATAAGATCTTTGTCAACCGTGCTTACCATTGCTTACTGTTCTTCAAGCTTAATTCAACAGGCACAAAAACTTTGTATAGAGGCAAATGACTCCACTGATGAAAGAAATATGAGCATTGATTTTACTGGGAAAGCTGTATATACTGCAATTTGGGTTGCTGCTGTGTCGTTGTTGATGGAGTTACTGGGTATCTCAACACAGAAGTGGTTGACTGCTGGTGGTTTGGGCACAGTATTGATTTCCCTTTCAGGTCGCGAGATATTTACAAACTTCCTTTCGAGTATAATGATTCATGCAACTCGACCATTTGTTGTGAATGAGCGGATTCAAACAAAAATTAAAGGATATGAGGTTACTGGTAAAGTTGAGCATGTAGGCTGGTGGTCACCAACAAGAATTAGAGGTTCGGATTGTGAAACAGTTCATATTCCTAATCACAATTTGAGTATAAATGTTGTGAGGAATCTTAGTAAGAAATCTCATTGGCGTATAAAGACTCACCTGGCAATCAGTCACCTGGATGTTAACAAGATTAATAGTATAATAGCTGATATGCGCAAGGTTTTGGCCAAAAATCCTCAAGTAGAGCAGAGAAAATTGCACAGAAGGGTTTTTCTAGAGAACATTGATCCAGAAAATCAGGCTCTTATGATATTGGTGTCCTGCTTTGTTAAAACTTCACGTTCTGAAGAGTACCTACGTGTAAAGGAGATAATCCTCTTGGATCTTCTCAGAGTTATAAGTCATCATCGAGCTCGGCTAGCCACACCCATCCGCACAGTTCAAAAAATGTGCAGTGATACTGATTTCGATATTGATCCATTTGATGACACAGTTTCTTCTCGTTCCAGATCAACGAAAAACCGTCCTTTTGCACTGATAAATCCACCTTATAAAGTTAAACCTTCAACTCATTCAACTATTACAAATGAGGACAGAGATATTAAGACAGATGAAACCTTGCCATCTGACTTCAAAGTAGACTCTGATGAATTTGTTGTGACACCAAGTTCGGTCCAGAAGACCTCCAAATTCCAAAAGTCCAAAAAGGAAAGAACAGGAAGCACTGCAAAGGAAACATCCAAAATTTTGCCAACATCCAATGAGTCTGGTTGTAGAGAGACTACAACACCATCAAAGCTAGATGATGAGAAATCTGTTGTTTCAGAATCTGAGTCTTCATCATCATCATCATCACTTAGTCATTCTTTGGATGAGAGTATTACTCTTGATGCTGCTCTGCTGGGCACAGAGAGAAAAACTATTGCAGTTGATGAAGAATTGGTTGACTCTAGCCCTTCAGAATCACAAGAAGTTGCAGCCCATCAGAATGGGAGTGAACCTCCTATTGGCAAGGATAAGAAGGATGAGCAGAATAGATGTTGA 1890 0.4048 MLCSSRNLGLHFTSIGLSRDVRLYSNHGSCCFYQFGGGIPTIMRSLTRRAIMRSLTRRSLMVTTMDMVAVSRSYNIAGKPIAIPFIPALGIIGFAVFGLEPLVRLSRKMFRQESTDRSWKKSSSYYILTSYFQPMLLWTGVMLICRDLDPLVLPSETSQAMKQRLLSFIRSLSTVLTIAYCSSSLIQQAQKLCIEANDSTDERNMSIDFTGKAVYTAIWVAAVSLLMELLGISTQKWLTAGGLGTVLISLSGREIFTNFLSSIMIHATRPFVVNERIQTKIKGYEVTGKVEHVGWWSPTRIRGSDCETVHIPNHNLSINVVRNLSKKSHWRIKTHLAISHLDVNKINSIIADMRKVLAKNPQVEQRKLHRRVFLENIDPENQALMILVSCFVKTSRSEEYLRVKEIILLDLLRVISHHRARLATPIRTVQKMCSDTDFDIDPFDDTVSSRSRSTKNRPFALINPPYKVKPSTHSTITNEDRDIKTDETLPSDFKVDSDEFVVTPSSVQKTSKFQKSKKERTGSTAKETSKILPTSNESGCRETTTPSKLDDEKSVVSESESSSSSSSLSHSLDESITLDAALLGTERKTIAVDEELVDSSPSESQEVAAHQNGSEPPIGKDKKDEQNRC* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0931 629 MobiDBLite consensus disorder prediction 526 543 - -
Vra5g0931 629 Pfam Mechanosensitive ion channel 212 418 IPR006685 GO:0016020|GO:0055085
Vra5g0931 629 Gene3D - 163 269 - -
Vra5g0931 629 Gene3D - 270 323 IPR023408 -
Vra5g0931 629 MobiDBLite consensus disorder prediction 446 490 - -
Vra5g0931 629 SUPERFAMILY Sm-like ribonucleoproteins 255 325 IPR010920 -
Vra5g0931 629 MobiDBLite consensus disorder prediction 474 490 - -
Vra5g0931 629 MobiDBLite consensus disorder prediction 506 574 - -
Vra5g0931 629 PANTHER MECHANOSENSITIVE ION CHANNEL-LIKE PROTEIN 66 541 - -
Vra5g0931 629 MobiDBLite consensus disorder prediction 558 574 - -
Vra5g0931 629 MobiDBLite consensus disorder prediction 592 629 - -
Vra5g0931 629 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 66 541 IPR045042 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0931 Vra-Chr5 15603338 15619080 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0931 68 628 Mechanosensitive Ion Channel Family AT5G10490 52.586 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0931 K22047 - gmx:100797302 909.442