Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0930 ATGGTCTGTCCAGGTTCAACGCAGCTGTCTCATGACGTTAGGCTCAACAGTAATATTGGATTCTGTGGTTTTCATCGTCATAATCGGATGGGGGTTGGTCGATTACATTTGGTCACCATAAATCTTTCACCGGGTAGCTTGAAGCAAGACTCTTCGGCACTCCATCTTTTAAGTAGACTACATGCTCCAATAAGGCACCTCCCTTCCAAATGTAATGTTTTTATATGTCGGTCTGTCCTACTACCGGGTGGAGGGAGTGGAACTCCTCTGATGAAATCTGCTGGTGTTATTTTAGCAAGATATTTATTCAGGTCATATGACGCTCTACAAAGGAACCCCGTTTTGCTTCAATTGATCCCAGCCCTTGGCATCATTGCCTTTGCTGCTTGCGGTCTTGAGCCACTCATTCGACTTAGCAGGGTTTTGTTCCTTCAAAGAACTGACAGCAGTTGGAAGAAAAGTAGTTCGCGATGTATTATGACATCTTATATTCAGCCATTGTTGTTATGGATTGGGGCAATGCTTATATGCAGGGCATTAGATCCAGTAGTCCTACCATCTAAGTCCAGCCAGGTTGTGAAGCTGCGGCTTCTGAATTTTGTGAGATCTTTGTCAACGGTGATTTCGTTTGCTTATTGTTTATCAAGTTTAATTCAACAAGCACAAAAATTCTTTGTGGAGGCAAATGACTCCAGTGGTTCAAGAAATGTGGCCTTTGATTTGGCTGGGAAGGGAGTATATGCTACTGTTTGGGTTGCTGCCGCATCATTGTTTATGGAGCTGTTAGGTTTCTCCACACAGAGGTGGTTAACTGCTGGTGGTTTGGGCACTGTATTGCTCACTCTGGCAGGTCGTGAGATATTTACAAACTTTCTGTCAAGCATAATGATCCATGCCACTCGGCCATTTGTTGAGAACGAGTGGATTCAAACGAAAATTGAAGGGTACGAGGTTTCTGGCACAGTAGAGCATGTAGGATGGTGGTCACCAACCATTGTTAGAGGTGATGACCGTGAGGCAGTTCATATTCCTAACCACAAGTTTACTGTAAATATTGTGAGAAATCTGACCCAGAAATCTCATTGGCGTATCAAGACTTACATTGCTATCAGTCACTTGGATGTTAACAAAATTAATAATATTGTAGCTGATATGCGCAAGGTTTTGTCAAAGAATCCTCAAGTAGAGCAGCAAAAATTGCACAGAAGGGTCTTTTTGGAGAATGTTAATCCTGAAAATCAGGCTCTTATGATATTAATATCTTGCTTTGTGAAAACTTCTCATTTTGAAGAGTACCTCTGTGTTAAGGAGGCAATCCTTTTGGATCTTCTCAGAGTCGTCAGTCATCATCGCGCCAGGCTAGCCACTCCCATCCGCACAGTTCAGAAAATATACAGTGAGGCTGACTCGGAAAATATACCTTTTGGGGACTCAATTTTCACTAGATCTAGAGCTGCAAATCGCCCATACTTACTGATAGAACCACCATATAAAGTTCATGAAGATAAAGTTAAACCCTCAACCCGTGCAGCTCGCACAAATGAGGAAAAGGATTCCGGGATTGATGAAATCATGGCATCTGACACCAAAGGAGATGAGAATTTTGGAGCAACATCTACCTCGTCAGCTGATGTAAACAACTCCAAGGATAAATCCAAGTCATTTTCAGAATCACAGACTAAAAGCGAAAATTCAGTAGATGAACGAAACGGAAGTACAGTTCCTGTATCTAGAATCCAGGCTCAAAGTACTGAGCTTGAATCCTCTCCTGTTGCTACCCATGAGACCATTGCTGCTACTTCACAGTCAAAGCAAGAAGAAGAAAAATCTTCTGTCTCTTCGTCATCGGTTAGACCTTCCCTGGAAAAGAACATTTTTCTTGGGGTTGTCTTAGAAGACTCAAAACGAACACTTCCAATCGAAGAAGAAAAGACTCCATCTCCCATGCCCACGGATTCACAAGAATTTGCTGTCCAACGGAACGGTGGTGGACCTCCTGCTAGCAAGGATAAGAAGGATGGTCCGTCTTCATTTCCAACTGATAAACAGAATGATTAG 2058 0.4261 MVCPGSTQLSHDVRLNSNIGFCGFHRHNRMGVGRLHLVTINLSPGSLKQDSSALHLLSRLHAPIRHLPSKCNVFICRSVLLPGGGSGTPLMKSAGVILARYLFRSYDALQRNPVLLQLIPALGIIAFAACGLEPLIRLSRVLFLQRTDSSWKKSSSRCIMTSYIQPLLLWIGAMLICRALDPVVLPSKSSQVVKLRLLNFVRSLSTVISFAYCLSSLIQQAQKFFVEANDSSGSRNVAFDLAGKGVYATVWVAAASLFMELLGFSTQRWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFVENEWIQTKIEGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVNIVRNLTQKSHWRIKTYIAISHLDVNKINNIVADMRKVLSKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYSEADSENIPFGDSIFTRSRAANRPYLLIEPPYKVHEDKVKPSTRAARTNEEKDSGIDEIMASDTKGDENFGATSTSSADVNNSKDKSKSFSESQTKSENSVDERNGSTVPVSRIQAQSTELESSPVATHETIAATSQSKQEEEKSSVSSSSVRPSLEKNIFLGVVLEDSKRTLPIEEEKTPSPMPTDSQEFAVQRNGGGPPASKDKKDGPSSFPTDKQND* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0930 685 MobiDBLite consensus disorder prediction 532 549 - -
Vra5g0930 685 MobiDBLite consensus disorder prediction 502 529 - -
Vra5g0930 685 Pfam Mechanosensitive ion channel 246 451 IPR006685 GO:0016020|GO:0055085
Vra5g0930 685 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 677 - -
Vra5g0930 685 MobiDBLite consensus disorder prediction 558 621 - -
Vra5g0930 685 Gene3D - 197 301 - -
Vra5g0930 685 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 677 IPR045042 -
Vra5g0930 685 SUPERFAMILY Sm-like ribonucleoproteins 287 357 IPR010920 -
Vra5g0930 685 MobiDBLite consensus disorder prediction 502 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0930 Vra-Chr5 15595081 15601606 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0930 9 658 Mechanosensitive Ion Channel Family AT1G58200 55.066 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0930 K22047 - gmx:100777815 1110.52