Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0918 ATGCCTCACAGAACCACATACATTTTCCCGCGTCAATTCCCGGAGCGAGGGTTGGATGAATCTTCCAAACAGCTGTTAGATCAAGAGAAAAAGAAAATCGTTAACTCAATCAAACATGACACGTTTAGCGTCGAAAGGGACACTCCGAAAAAACCGCTTCCCACTAAAGAAAACGAAGTCATTCTCTCCTCCGCTAAGGACTCCCCGTTCTCCGACCTGTTCGCCGCCGGAGAGAAGTTCCGGACTAAACAAAAGCAAATCGCCGCGTTCTGCGATTGGCTGATCGACAAGAAAGTCAGCCACTCCGGCCACCACCAAGACCACGGCTGTGAAAGCGACCTACTTCTTCCGGGGGAAACCACCATCAAGGACGCTGCCGTTGACCAGAGCTTTGACCGTCAGGTTTCGCTGCCGAGGCTATCGAGCGGGAGCAGCTATGCTGGAAGCTTGTTTTCGGGGACGACTTTTGATTGCAATTTTTCCAGCGGTATTAAGGAAGAAACGTCGTCGTCTCGCACTCTCACTACTATTGCTGCGCCGAGGCACAGGGAAGATGAGGAAGAGGAGGTGGAGGAAGAGAGCATGGAGAAGTTAGCGAAGAAGTCGAAAGAGAGCTACATCTTGCAACTCACGTTAGCGAAGAGGCTCAACTTTTTGGCTAGCCTCGTTACCGAACCTGTTCTCACTCCAGGAACCGAAACCTGGGATGCCGAATCCGTTTCTTACCGCCTATGGGTGAGTGGATGTTTATCTTACACAGACAAGATATCTGACGGGTTTTATAACATACTGGGGATGAATCCATATCTTTGGGTGATGTGTAATGATGTGGAGGACGGTAGAAGGATACCTACTTTGATGGCGCTCAAAGCGGTTGAGCCCAGCGAAACTTGTATGGAGGTGGTGCTTGTTGATAGACGCGAGGACTCTCGCTTGAAGCTGCTTCAAGATAAGGCGCAAGAGTTGTATTGTGCTTCTGAGAACACCTTGGTGTTAGTAGAGCAGCTAGGGAAACTGGTAGCCATTTATATGGGGGGTATGTTCCCGGTGGAGCAAGGCGATCTTCACAAGCGCTGGAAATTGGTTAGTAAGAAGTTGAGGACTTTGCATAAGTGTGTTGTGCTTCCCATTGGCAGTCTGTCTAATGGGCTTTGTAGGCATCGGGCAATACTTTTTAAGAGATTGGCAGATTACATAGGTTTGCCCTGTCGTATAGCTCGTGGTTGCAAGTATTGTGTTGCAGATCATAGATCCTCTTGCCTAGTCAAAATTAAGGATGACAAACAGCTCTCTAGGGAGTATGTGGTTGACCTAGTTGGGGAACCGGGAAATGTCCATGGACCAGATTCCTCAATAAATGGAGCATATGTTTCTTCAATGCCTTCCCCGTTTCAAATTTGTCACTTGAAAGAATCACAATCAACTTATATGGATGACATGGCAAGTTCTGAATCCGCAGGTTCCAATGACAGACCTTTTAATCCTGAAAATCTTCCGTATTCAGGCTGTGGAAATAATGATCAACAAGCTAAAGAAACTGATTTGCTGAGAAGCTCCATTTATGGTTCAGTTGATCAAATCTGTGAAGTTACAGAACCATCTCTGATTCCTTTTGGATTAGAAGGGAATGACGAGGAATGCTCAGTTATTAGTTCGGTTTTGCCTACCATCCATGAAGATGATTCTAAAATTCTTCATCCAGACATCGAAGCATCACTAAATGAATATCCAAGCCTTAGGGAAGATGTAGTACAATTACAAGAAATTTCCAACAATGAGATCATTGTAAATGAAAGTTCTGCGCTGAAAAGTAGTTTCAAGCGATCTATACTTGGTTCATCTAGCCAGTCAGAACTGAAACAGGTAAACAATAGAAGTGAAAACAAGGGTTGTTTACCTTCTGGGAATATTCCAAGATATTTGAATCTTGAACCATCACTTTCAATGGACTGGCTTGAGATATCGTGGGAGGATTTACGAATTAAAGAGCGTGTTGGTGCTGGTTCATTCGGTACAGTGTACCGTGCTGAATGGCATGGATCGGATGTTGCAGTCAAGGTTTTAACAGTTCAGGATTTCCATGATGATCAGTTGAAGGAGTTCCTGAGAGAGGTTGCAATAATGAAACGGGTCCGCCATCCGAATGTGGTGCTCTTCATGGGCTCTGTTACAAAACGCCCCCATCTATCAATAGTGACAGAGTATTTGCCTAGGGGTAGTTTATACCGCCTGATACACAGACCAGCATCTGGTGAAATTCTGGACAAGAGAAAGAGACTGCGGATGGCATTGGATGTGGCTAAAGGAATCAATTATCTCCACTGTCTGAAACCTCCAATTGTGCACTGGGATCTGAAATCCCCAAACTTGTTAGTGGATAAAAATTGGACTGTGAAGGTTTGTGATTTTGGATTATCCAGATTTAAGGCAAACACTTTCATACCGTCCAAATCAGTTGCTGGAACACCTGAGTGGATGGCTCCAGAATTTCTTCGTGGAGAACCTTCCAATGAGAAATCTGACGTATACAGTTTTGGAGTTATCCTGTGGGAACTTGTGACCATGCAACAGCCATGGAGTGGACTTAGCCCTGCACAGGTGGTTGGAGCTGTTGCTTTCCAGAATAGGAGGCTGGCTATCCCTCCAAACATCTCCCCAGCTTTGGCCTCCCTCATGGAATCTTGTTGGGCGGATGAGCCTAGTGAGAGGCCATCTTTTGGTAGCATAGTTGAGTCACTAAAAAAGCTGGTAAAATCTCCGGCAGAACTGATAAAGATGGGAGATACATAG 2790 0.4548 MPHRTTYIFPRQFPERGLDESSKQLLDQEKKKIVNSIKHDTFSVERDTPKKPLPTKENEVILSSAKDSPFSDLFAAGEKFRTKQKQIAAFCDWLIDKKVSHSGHHQDHGCESDLLLPGETTIKDAAVDQSFDRQVSLPRLSSGSSYAGSLFSGTTFDCNFSSGIKEETSSSRTLTTIAAPRHREDEEEEVEEESMEKLAKKSKESYILQLTLAKRLNFLASLVTEPVLTPGTETWDAESVSYRLWVSGCLSYTDKISDGFYNILGMNPYLWVMCNDVEDGRRIPTLMALKAVEPSETCMEVVLVDRREDSRLKLLQDKAQELYCASENTLVLVEQLGKLVAIYMGGMFPVEQGDLHKRWKLVSKKLRTLHKCVVLPIGSLSNGLCRHRAILFKRLADYIGLPCRIARGCKYCVADHRSSCLVKIKDDKQLSREYVVDLVGEPGNVHGPDSSINGAYVSSMPSPFQICHLKESQSTYMDDMASSESAGSNDRPFNPENLPYSGCGNNDQQAKETDLLRSSIYGSVDQICEVTEPSLIPFGLEGNDEECSVISSVLPTIHEDDSKILHPDIEASLNEYPSLREDVVQLQEISNNEIIVNESSALKSSFKRSILGSSSQSELKQVNNRSENKGCLPSGNIPRYLNLEPSLSMDWLEISWEDLRIKERVGAGSFGTVYRAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGSVTKRPHLSIVTEYLPRGSLYRLIHRPASGEILDKRKRLRMALDVAKGINYLHCLKPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFIPSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLSPAQVVGAVAFQNRRLAIPPNISPALASLMESCWADEPSERPSFGSIVESLKKLVKSPAELIKMGDT* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0918 929 CDD STKc_MAP3K-like 665 913 - -
Vra5g0918 929 PRINTS Tyrosine kinase catalytic domain signature 733 746 IPR001245 GO:0004672|GO:0006468
Vra5g0918 929 PRINTS Tyrosine kinase catalytic domain signature 774 792 IPR001245 GO:0004672|GO:0006468
Vra5g0918 929 PRINTS Tyrosine kinase catalytic domain signature 840 862 IPR001245 GO:0004672|GO:0006468
Vra5g0918 929 PRINTS Tyrosine kinase catalytic domain signature 884 906 IPR001245 GO:0004672|GO:0006468
Vra5g0918 929 PANTHER SERINE/THREONINE-PROTEIN KINASE CTR1-LIKE ISOFORM X1 117 927 - -
Vra5g0918 929 Pfam Ethylene-responsive protein kinase Le-CTR1 237 445 - -
Vra5g0918 929 ProSiteProfiles Protein kinase domain profile. 659 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0918 929 Gene3D Phosphorylase Kinase; domain 1 652 736 - -
Vra5g0918 929 Pfam Protein tyrosine and serine/threonine kinase 659 913 IPR001245 GO:0004672|GO:0006468
Vra5g0918 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 780 792 IPR008271 GO:0004672|GO:0006468
Vra5g0918 929 Gene3D Transferase(Phosphotransferase) domain 1 738 924 - -
Vra5g0918 929 SMART serkin_6 659 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0918 929 ProSitePatterns Protein kinases ATP-binding region signature. 665 686 IPR017441 GO:0005524
Vra5g0918 929 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 117 927 - -
Vra5g0918 929 SUPERFAMILY Protein kinase-like (PK-like) 635 912 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0918 Vra-Chr5 15475043 15482779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0918 1 927 MAP Kinase Kinase Kinase AT4G24480 56.499 0.0 1053
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vra5g0918 PK_Tyr_Ser-Thr 1.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0918 - - gmx:100808435 1602.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0280 6 2066693 2072377 Vra5g0918 5 15475043 15482779 PCT