Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0915 ATGTCCTCTTCTTTCTCCTCCTCCAATTCGCCCTGCGCCGCCTGCAAGATTCAGCGCCGGAAGTGCACGCAGGAGTGCGTCTTCGCGCCCTATTTTCCGCCGGACAACCCGCAGCGCTTTGCCTACGTCCACAAGGTCTTCGGTGCCAGCAACGTCGCAAAGCTTCTCAACGAACTCAACGCGGCGCAGCGGGAGGACGCGGTTAAGTCACTCGCCTACGAGGCCGAGGCGCGTCTGCGGGACCCCGTTTATGGCTGCGTCGGTCTCATCTCCATCCTCCAGCACCGCCTCAAGCAGTTGCAGACCGAGCTCCACCACGCTAAGAAGGAACTCGCCTCCTACATCGGACCCCACGCCATGCTCCCTCCTCCTCCTCCGCCTCCTCCGCAACCGCGCACCTTCTCTCTCTTTCCCTTCAAAGCGCCACCTCCTCCTCATCAGGATCTTTTCGCCTTCACCGACGACGGTGCTTCCGCTTCTCACTCTTCCCACGCCGCCTTCAACCACCTCGCCGTTCTCTCGCCTACCCTCGCCTCCGATCACGCCTTCCCTCACCCACCCACCCATCCTCTCGCTCTTCCGCACCACCAACACCTAATGCTCTCCCCTATGCAATCCAAGCCCCAGACCGACCCTGCTTAA 642 0.6168 MSSSFSSSNSPCAACKIQRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQREDAVKSLAYEAEARLRDPVYGCVGLISILQHRLKQLQTELHHAKKELASYIGPHAMLPPPPPPPPQPRTFSLFPFKAPPPPHQDLFAFTDDGASASHSSHAAFNHLAVLSPTLASDHAFPHPPTHPLALPHHQHLMLSPMQSKPQTDPA* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0915 213 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Vra5g0915 213 Coils Coil 90 110 - -
Vra5g0915 213 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Vra5g0915 213 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 122 - -
Vra5g0915 213 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-RELATED 6 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0915 Vra-Chr5 15421544 15423299 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0915 5 132 AS2 family AT5G66870 76.515 1.52e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra5g0915 LOB 2.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0915 - - gmx:100819170 315.849