LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra5g0913	ATGAGTTCAACTCCCACCAGTATGAGAGTCACCGAGGATTCTGGCCAAATAGAGAGCTCCCTTTGGGTTCTGGAACCTCCCAATCCACCACCTCTAAGGAACAAGCTATTCACTCCACTCAAGAAATCCATCTCCTCTTTCTCATCTAATAACAAGCCTTGTCATCGACGTCTTCTTTCATTCTTAGAGACTTTGTTTCCCATCCTTTGCTGGTTCAAAACTTACACAGCCTCAAAGTTTAAAAATGATTTGCTAGCCGGTTTAACTCTTGCTAGCCTCAGCATACCTCAGAGTATAGGATATGCTAATTTGGCGAAGCTTGATCCTCAGTATGGCTTGTACACCAGTGTTGTTCCTCCTCTTATCTATGCTGTGATGGGGAGTTCAAGAGAAATAGCCATTGGACCTGTGGCTGTAGTATCATTGCTTCTATCCTCCCTAGTCCCCAAAGTGGTAGATCCTGCTGTTGATCCTGATGCCTACAGGAGTGTTGTCTTTACCGTTACCTTATTTGCTGGAATCTTTCAAGCTGCATTCGGTATTTTCAGGTTGGGGTTTCTTGTGGATTTTCTTTCACATGCTGCACTTGTTGGATTCATGGCAGGCGCAGCCATCGTTATTGGTCTGCAGCAGCTGAAGGGGTTGCTGGGGATTACTCACTTTACCAACAAAACTGATGTAATATCCGTGTTGGAGTCTGTATACAAGTCACTCCGCCAACAGATAACATCAACAGAAAAATGGTACCCTCTGAATTTTGTCATCGGGTGTTCATTCCTGATATTCCTATTAATAGCTCGATTTGTTGGCAGAAGAAACAAAAAACTTTTCTGGTTGCCAGCTATTGCTCCTCTTGTATCGGTTTTACTATCAACTTTAATTGTATATTTGTCAAAAGCTGATCAGAATGGGGTTAATATAGTAAGGCATGTCAAAAGAGGGTTGAATCCAAGTTCAGTTCACAAGTTACAATTTCATGGTCCAAATGTTGGACAAACAGCTAAAATTGGATTGATTTCTGCCGTTATTGCTCTCACTGAAGCAATAGCAGTTGGTAGATCTTTTGCTTCCATTAAGGGATACCATCTTGATGGCAACAAAGAAATGCTGGCAATGGGATGCATGAACATTGCGGGATCTCTCTCTTCATGCTATGTGGCAACTGGTTCTTTCTCAAGGACTGCAGTAAATTTCAGTGCAGGATGTCAAACATCAGTATCAAATATTGTGATGGCAGTTACTGTGCTTCTGTGTCTTGAGTTGTTTACAAGGCTCCTGTACTACACTCCTATGGCCATACTTGCATCTATCATCCTCTCTGCACTTCCTGGGTTAATTGACATAAATGAAGCTTGTTATATTTGGAAGGTTGACAAATTTGACTTTCTTGCTTGCATTGGTGCCTTCTTCGGAGTCTTGTTTGTATCAGTGGAAACTGGTCTTCTTGTTGCAGTCTCAATCTCCTTTGCAAAGATACTGATACAATCAATCAGACCAGGGATAGAAGTTTTAGGCCGAGTTCCAAGAACAGAAGCTTTCTGTGATGTTAGTCAATATCCTATGGCCACAAGCACTCCAGGAATTTTGGTGATTCGCATAAGTTCTGGTTCACTCTGCTTTGCAAATGCTAATTTTATTAGAGAAAGAATACTGAAGTGGATCATGGAAGAAGAAAACGAACTTGCCAAGGGAAGGGTCCATGCAGTGATCTTAGACATGGGCAATCTCATGAATGTTGATACTTCTGGGATTCTAGTACTGGAGGAACTGCACAAGAGGTTGCTTTCGCGTGGCGTACAGTTGGCCATGGTGAACCCCAGGTGGCTAGTGATTTACAAGCTGAAAGTGGCAAACTTTGTGGATAAAATTGGAAAGAAATGGGTTTTTCTTACTGTTGCTGAAGCTGTAGATGCATGTCTATCTTCAAAATTCCCTGAACCATGA	1944	0.4203	MSSTPTSMRVTEDSGQIESSLWVLEPPNPPPLRNKLFTPLKKSISSFSSNNKPCHRRLLSFLETLFPILCWFKTYTASKFKNDLLAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVVPPLIYAVMGSSREIAIGPVAVVSLLLSSLVPKVVDPAVDPDAYRSVVFTVTLFAGIFQAAFGIFRLGFLVDFLSHAALVGFMAGAAIVIGLQQLKGLLGITHFTNKTDVISVLESVYKSLRQQITSTEKWYPLNFVIGCSFLIFLLIARFVGRRNKKLFWLPAIAPLVSVLLSTLIVYLSKADQNGVNIVRHVKRGLNPSSVHKLQFHGPNVGQTAKIGLISAVIALTEAIAVGRSFASIKGYHLDGNKEMLAMGCMNIAGSLSSCYVATGSFSRTAVNFSAGCQTSVSNIVMAVTVLLCLELFTRLLYYTPMAILASIILSALPGLIDINEACYIWKVDKFDFLACIGAFFGVLFVSVETGLLVAVSISFAKILIQSIRPGIEVLGRVPRTEAFCDVSQYPMATSTPGILVIRISSGSLCFANANFIRERILKWIMEEENELAKGRVHAVILDMGNLMNVDTSGILVLEELHKRLLSRGVQLAMVNPRWLVIYKLKVANFVDKIGKKWVFLTVAEAVDACLSSKFPEP*	648

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vra5g0913	647	CDD	STAS_SulP_like_sulfate_transporter	519	632	-	-
Vra5g0913	647	ProSiteProfiles	STAS domain profile.	535	639	IPR002645	-
Vra5g0913	647	Pfam	STAS domain	519	635	IPR002645	-
Vra5g0913	647	Gene3D	STAS domain	498	642	IPR036513	-
Vra5g0913	647	Pfam	Sulfate permease family	80	466	IPR011547	GO:0016021
Vra5g0913	647	PANTHER	SULFATE TRANSPORTER	11	646	IPR001902	GO:0015301\|GO:0016020\|GO:0055085
Vra5g0913	647	TIGRFAM	sulP: sulfate permease	67	635	IPR001902	GO:0015301\|GO:0016020\|GO:0055085
Vra5g0913	647	SUPERFAMILY	SpoIIaa-like	523	639	IPR036513	-
Vra5g0913	647	ProSitePatterns	SLC26A transporters signature.	109	130	IPR018045	GO:0008271\|GO:0008272
Vra5g0913	647	PANTHER	SLC26A/SULP TRANSPORTER-RELATED	11	646	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra5g0913	Vra-Chr5	15318665	15322876	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra5g0913	1	643	Inorganic Solute Cotransporters	AT5G10180	62.940	0.0	827

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra5g0913	K17469		-	gmx:100805269	1106.66

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra6g0983	6	11384854	11389321	Vra5g0913	5	15318665	15322876	PCT

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