Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0913 ATGAGTTCAACTCCCACCAGTATGAGAGTCACCGAGGATTCTGGCCAAATAGAGAGCTCCCTTTGGGTTCTGGAACCTCCCAATCCACCACCTCTAAGGAACAAGCTATTCACTCCACTCAAGAAATCCATCTCCTCTTTCTCATCTAATAACAAGCCTTGTCATCGACGTCTTCTTTCATTCTTAGAGACTTTGTTTCCCATCCTTTGCTGGTTCAAAACTTACACAGCCTCAAAGTTTAAAAATGATTTGCTAGCCGGTTTAACTCTTGCTAGCCTCAGCATACCTCAGAGTATAGGATATGCTAATTTGGCGAAGCTTGATCCTCAGTATGGCTTGTACACCAGTGTTGTTCCTCCTCTTATCTATGCTGTGATGGGGAGTTCAAGAGAAATAGCCATTGGACCTGTGGCTGTAGTATCATTGCTTCTATCCTCCCTAGTCCCCAAAGTGGTAGATCCTGCTGTTGATCCTGATGCCTACAGGAGTGTTGTCTTTACCGTTACCTTATTTGCTGGAATCTTTCAAGCTGCATTCGGTATTTTCAGGTTGGGGTTTCTTGTGGATTTTCTTTCACATGCTGCACTTGTTGGATTCATGGCAGGCGCAGCCATCGTTATTGGTCTGCAGCAGCTGAAGGGGTTGCTGGGGATTACTCACTTTACCAACAAAACTGATGTAATATCCGTGTTGGAGTCTGTATACAAGTCACTCCGCCAACAGATAACATCAACAGAAAAATGGTACCCTCTGAATTTTGTCATCGGGTGTTCATTCCTGATATTCCTATTAATAGCTCGATTTGTTGGCAGAAGAAACAAAAAACTTTTCTGGTTGCCAGCTATTGCTCCTCTTGTATCGGTTTTACTATCAACTTTAATTGTATATTTGTCAAAAGCTGATCAGAATGGGGTTAATATAGTAAGGCATGTCAAAAGAGGGTTGAATCCAAGTTCAGTTCACAAGTTACAATTTCATGGTCCAAATGTTGGACAAACAGCTAAAATTGGATTGATTTCTGCCGTTATTGCTCTCACTGAAGCAATAGCAGTTGGTAGATCTTTTGCTTCCATTAAGGGATACCATCTTGATGGCAACAAAGAAATGCTGGCAATGGGATGCATGAACATTGCGGGATCTCTCTCTTCATGCTATGTGGCAACTGGTTCTTTCTCAAGGACTGCAGTAAATTTCAGTGCAGGATGTCAAACATCAGTATCAAATATTGTGATGGCAGTTACTGTGCTTCTGTGTCTTGAGTTGTTTACAAGGCTCCTGTACTACACTCCTATGGCCATACTTGCATCTATCATCCTCTCTGCACTTCCTGGGTTAATTGACATAAATGAAGCTTGTTATATTTGGAAGGTTGACAAATTTGACTTTCTTGCTTGCATTGGTGCCTTCTTCGGAGTCTTGTTTGTATCAGTGGAAACTGGTCTTCTTGTTGCAGTCTCAATCTCCTTTGCAAAGATACTGATACAATCAATCAGACCAGGGATAGAAGTTTTAGGCCGAGTTCCAAGAACAGAAGCTTTCTGTGATGTTAGTCAATATCCTATGGCCACAAGCACTCCAGGAATTTTGGTGATTCGCATAAGTTCTGGTTCACTCTGCTTTGCAAATGCTAATTTTATTAGAGAAAGAATACTGAAGTGGATCATGGAAGAAGAAAACGAACTTGCCAAGGGAAGGGTCCATGCAGTGATCTTAGACATGGGCAATCTCATGAATGTTGATACTTCTGGGATTCTAGTACTGGAGGAACTGCACAAGAGGTTGCTTTCGCGTGGCGTACAGTTGGCCATGGTGAACCCCAGGTGGCTAGTGATTTACAAGCTGAAAGTGGCAAACTTTGTGGATAAAATTGGAAAGAAATGGGTTTTTCTTACTGTTGCTGAAGCTGTAGATGCATGTCTATCTTCAAAATTCCCTGAACCATGA 1944 0.4203 MSSTPTSMRVTEDSGQIESSLWVLEPPNPPPLRNKLFTPLKKSISSFSSNNKPCHRRLLSFLETLFPILCWFKTYTASKFKNDLLAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVVPPLIYAVMGSSREIAIGPVAVVSLLLSSLVPKVVDPAVDPDAYRSVVFTVTLFAGIFQAAFGIFRLGFLVDFLSHAALVGFMAGAAIVIGLQQLKGLLGITHFTNKTDVISVLESVYKSLRQQITSTEKWYPLNFVIGCSFLIFLLIARFVGRRNKKLFWLPAIAPLVSVLLSTLIVYLSKADQNGVNIVRHVKRGLNPSSVHKLQFHGPNVGQTAKIGLISAVIALTEAIAVGRSFASIKGYHLDGNKEMLAMGCMNIAGSLSSCYVATGSFSRTAVNFSAGCQTSVSNIVMAVTVLLCLELFTRLLYYTPMAILASIILSALPGLIDINEACYIWKVDKFDFLACIGAFFGVLFVSVETGLLVAVSISFAKILIQSIRPGIEVLGRVPRTEAFCDVSQYPMATSTPGILVIRISSGSLCFANANFIRERILKWIMEEENELAKGRVHAVILDMGNLMNVDTSGILVLEELHKRLLSRGVQLAMVNPRWLVIYKLKVANFVDKIGKKWVFLTVAEAVDACLSSKFPEP* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0913 647 CDD STAS_SulP_like_sulfate_transporter 519 632 - -
Vra5g0913 647 ProSiteProfiles STAS domain profile. 535 639 IPR002645 -
Vra5g0913 647 Pfam STAS domain 519 635 IPR002645 -
Vra5g0913 647 Gene3D STAS domain 498 642 IPR036513 -
Vra5g0913 647 Pfam Sulfate permease family 80 466 IPR011547 GO:0016021
Vra5g0913 647 PANTHER SULFATE TRANSPORTER 11 646 IPR001902 GO:0015301|GO:0016020|GO:0055085
Vra5g0913 647 TIGRFAM sulP: sulfate permease 67 635 IPR001902 GO:0015301|GO:0016020|GO:0055085
Vra5g0913 647 SUPERFAMILY SpoIIaa-like 523 639 IPR036513 -
Vra5g0913 647 ProSitePatterns SLC26A transporters signature. 109 130 IPR018045 GO:0008271|GO:0008272
Vra5g0913 647 PANTHER SLC26A/SULP TRANSPORTER-RELATED 11 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0913 Vra-Chr5 15318665 15322876 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0913 1 643 Inorganic Solute Cotransporters AT5G10180 62.940 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0913 K17469 - gmx:100805269 1106.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0983 6 11384854 11389321 Vra5g0913 5 15318665 15322876 PCT