Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0912 ATGACTTCAATGGGCCGTCCTTCTGATCAGAATCTTGAAACCAAAGAGATCGATCTGAGAAGTATGTCGTCTTCTTCACATGGTCAGGTACCACAAGTCTACAAAGTGGCAGTTCCTCCAAGACAGAACCTCTTCAAGGAATTCCAAGCCACCATTAAAGAAACATTCTTTGCTGATGATCCTCTAAGACCCTTCAAAGATCAATCTATATCAAGGAAGTTCATCCTCGGTATTGAGGCCATATTTCCAATACTTAAGTGGGGAAGAAGTTACAACCTTAAAAAATTTAGAGGGGATTTAATATCTGGTCTCACTATTGCAAGTCTTTGCATTCCTCAGGATATTGGATACGCCAAGCTTGCACATTTGTCTCCACAGTATGGACTGTACTCAAGTTTTGTTCCACCATTGATCTATGCTGTCATGGGTAGCTCTCGTGATATTGCTATAGGACCTGTAGCAGTGGTTTCTCTCTTGTTGGGGACCCTACTTAGTAATGAGTTTGATCCTATTAAAAATGCGGAAGAATATCAGCGACTTGCTTTTACAGCCACTTTTTTTGCTGGGATTACTCAAGCAACGCTTGGTGTTCTTAGGTTAGGATTCTTGATAGACTTCCTATCCCATGCTGCTATTGTCGGTTTTATGGGGGGTGCTGCTATCACAATTTCCCTTCAACAGCTCAAAGGTTTCCTTGGCATTAAAACTAAAATGTTCACAACGAAAACTGATATTGTCTCTGTGCTGCATTCAGTATTCCATACAGCCCATCATGGATGGAACTGGGAAACTATAGTCATTGGAGCTAGTTTTTTGGGTTTTCTTCTGGTCACCAAATACATTGGAAAGAAAAACAGGAGATTATTCTGGCTGCCAGCAATTGCTCCATTGATATCCGTTATTTTGTCCACTTTTTTTGTATTCATAACCCGTGCAGATAAGAAAGGAGTAGAAATTGTGAGAAAAATAGAAAGAGGAATCAATCCATCATCTGTTAAAGATCTTTATTTAACAGGAGAAAACCTTGGAAAAGGTTTTAAAGTTGGCATCGTGGCAGGCATGATAGCATTGACTGAAGCCTCGGCAATTGGAAGAACATTTGCATCTATGAAGGACTATCAACTGGATGGAAACAAAGAAATGGTTGCACTAGGAACAATGAATATTGTTGGTTCAATGACTTCCTGTTATGTGGCAACTGGTTCTTTCTCTCGGTCAGCAGTAAATTTCATGGCTGGCTGCCAAACTGCAGTCTCTAACATTGTGATGTCAGTAGTTGTGTTCTTAACCCTGGAATTCATCACTCCACTTTTTAAGTACACTCCAAATGCCATTCTTTCTGCCATCATCATTTCTGCTGTCGTCAACCTTATAGACTATGAGGCAGCAATTTTGATTTGGAAGATAGATAAATTTGACTTTGTCGCTTGCATGGGTGCATTCTTTGGCGTTGTTTTTGTCTCGGTTGAGATAGGACTTCTAATTGCTGTCTGTATATCCTTTGCAAAGATCCTACTACAAGTAACAAGACCCCGAACCGCAATTCTGGGGAAGATTCCTAGGACTAATGTCTATAGAAACATCCAACAATATCCAGAAGCTAGTAAGGTTCCAGGTGTACTGATTGTGAGAGTTGATTCTGCGGTATATTTTTCCAACTCCAATTATGTCAAAGAAAGGACATTAAGATGGCTGACGGATGAAGAAGAAAAAGTGAAAGGAGACTACCCCACAAAAATCCAGTTTTTGATAGTTGAAATGTCACCCGTTACTGATATTGATACAAGTGGCATCCAAGCCTTCCAAGAGTTACATAGAAGTCTTGAAAAGAGAGGAGTTGAGCTTGTTCTGGCAAATCCTGGTCCAGTAGTGACAGAGAAGCTTTACGCATCCAATTTTGTAAACGCAATAGGAGAGGACAAGATCTTCCTCACCGTTGCAGAGGCTATTGCATATTGTTCTCCAAAGGTGGTTGAGGACCCTTGA 1986 0.4053 MTSMGRPSDQNLETKEIDLRSMSSSSHGQVPQVYKVAVPPRQNLFKEFQATIKETFFADDPLRPFKDQSISRKFILGIEAIFPILKWGRSYNLKKFRGDLISGLTIASLCIPQDIGYAKLAHLSPQYGLYSSFVPPLIYAVMGSSRDIAIGPVAVVSLLLGTLLSNEFDPIKNAEEYQRLAFTATFFAGITQATLGVLRLGFLIDFLSHAAIVGFMGGAAITISLQQLKGFLGIKTKMFTTKTDIVSVLHSVFHTAHHGWNWETIVIGASFLGFLLVTKYIGKKNRRLFWLPAIAPLISVILSTFFVFITRADKKGVEIVRKIERGINPSSVKDLYLTGENLGKGFKVGIVAGMIALTEASAIGRTFASMKDYQLDGNKEMVALGTMNIVGSMTSCYVATGSFSRSAVNFMAGCQTAVSNIVMSVVVFLTLEFITPLFKYTPNAILSAIIISAVVNLIDYEAAILIWKIDKFDFVACMGAFFGVVFVSVEIGLLIAVCISFAKILLQVTRPRTAILGKIPRTNVYRNIQQYPEASKVPGVLIVRVDSAVYFSNSNYVKERTLRWLTDEEEKVKGDYPTKIQFLIVEMSPVTDIDTSGIQAFQELHRSLEKRGVELVLANPGPVVTEKLYASNFVNAIGEDKIFLTVAEAIAYCSPKVVEDP* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0912 661 PANTHER SULFATE TRANSPORTER 13 661 IPR001902 GO:0015301|GO:0016020|GO:0055085
Vra5g0912 661 PANTHER HIGH AFFINITY SULFATE TRANSPORTER TYPE 1 13 661 - -
Vra5g0912 661 TIGRFAM sulP: sulfate permease 83 649 IPR001902 GO:0015301|GO:0016020|GO:0055085
Vra5g0912 661 Pfam STAS domain 531 649 IPR002645 -
Vra5g0912 661 Gene3D STAS domain 510 657 IPR036513 -
Vra5g0912 661 ProSiteProfiles STAS domain profile. 530 653 IPR002645 -
Vra5g0912 661 SUPERFAMILY SpoIIaa-like 532 654 IPR036513 -
Vra5g0912 661 CDD STAS_SulP_like_sulfate_transporter 531 646 - -
Vra5g0912 661 Pfam Sulfate permease family 96 478 IPR011547 GO:0016021
Vra5g0912 661 ProSitePatterns SLC26A transporters signature. 125 146 IPR018045 GO:0008271|GO:0008272
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0912 Vra-Chr5 15292841 15299713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0912 1 660 Inorganic Solute Cotransporters AT1G22150 71.818 0.0 957
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0912 K17470 - gmx:100804208 1158.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0986 6 11686125 11693592 Vra5g0912 5 15292841 15299713 PCT