Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0897 ATGGCAGCTATGATGGGTTTTTACAGCAGCACAGAGTTTCAACTTCCCTCAGATCCGTTCAGGGGTGAACTAATGGAAGTTCTTGAACCTTTTATGAAAAGTCCTTCCTCAACCCCTTCCTTTTCTTCCTCACCTTCAAACTCCTCTTTTCCTTCTACTTCTTACTCTCCTTCTCCCATCTACTTCCCCTCCTCACCCTCCTTCCCTGTTATCTACTCAAACAACTGCTCCGCATCGATGACCCATGCTTTTGCCGACGGGTTATCCCTATCCAACACCCAAAACATCATAGGCTTCGCGCAAGGACAACCAACGTCTCTTCTCGGCCTCAACCACCTAACCCCCTCTCAGATCTCTCAGATCCAGGCTCAAATCCAGACCCAGACCCAGCACCAGCAGAATCCCAACACCCTCAACTTCCTCGGGACCAAACCCATCCCCATGAAGCACGTGGGCATGCCTCTGAAGCCTACGAAGCTTTATCGAGGGGTGCGGCAGAGGCACTGGGGGAAGTGGGTGGCCGAGATCAGACTCCCAAAGAATCGGACCAGGCTCTGGCTGGGAACATTCGACACCGCCGAGGAAGCCGCTCTGGCGTACGACAAGGCCGCGTACAAACTCCGAGGTGACTTCGCCAGGCTTAACTTCCCAAACCTCCGTCACCAGGGTTCCTCGGTGGGCGGAGGCTTCGGGGAGTACAAGCCGCTCCATTCCTCCGTTGATGCCAAGCTTCAGGCCATATGCGAAGGCCTGGCTGAGATGCAGAAACAGGGGAAGACCGAAAAGCCTCAGGGTTCGTCGAAGAGGTCACGGTCCAAAGTGGCTCCTCCGCCAGAGAAGGCTGTTTCGGACGACAACAGCAGCAACAAGTGTTGCAAGGTGGAAGCTTCCTCGTCTCCTGTTACGACGGAGAGCGAGGGGTCTGAAGGTTCTTCGCCTCTCTCGGATCTGACGTTTGCCGACGTGAGCGAGCCTCAGTGGGAAGGTGATTCGGATAATTTTAATCTCCTTAAGTACCCCTCTTATGAGATCGACTGGGATTCTCTGTGA 1050 0.5419 MAAMMGFYSSTEFQLPSDPFRGELMEVLEPFMKSPSSTPSFSSSPSNSSFPSTSYSPSPIYFPSSPSFPVIYSNNCSASMTHAFADGLSLSNTQNIIGFAQGQPTSLLGLNHLTPSQISQIQAQIQTQTQHQQNPNTLNFLGTKPIPMKHVGMPLKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSSVGGGFGEYKPLHSSVDAKLQAICEGLAEMQKQGKTEKPQGSSKRSRSKVAPPPEKAVSDDNSSNKCCKVEASSSPVTTESEGSEGSSPLSDLTFADVSEPQWEGDSDNFNLLKYPSYEIDWDSL* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0897 349 MobiDBLite consensus disorder prediction 255 334 - -
Vra5g0897 349 Gene3D AP2/ERF domain 160 218 IPR036955 GO:0003700|GO:0006355
Vra5g0897 349 CDD AP2 159 219 IPR001471 GO:0003700|GO:0006355
Vra5g0897 349 Pfam AP2 domain 161 209 IPR001471 GO:0003700|GO:0006355
Vra5g0897 349 PRINTS Ethylene responsive element binding protein signature 161 172 IPR001471 GO:0003700|GO:0006355
Vra5g0897 349 PRINTS Ethylene responsive element binding protein signature 183 199 IPR001471 GO:0003700|GO:0006355
Vra5g0897 349 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 348 - -
Vra5g0897 349 SMART rav1_2 160 223 IPR001471 GO:0003700|GO:0006355
Vra5g0897 349 MobiDBLite consensus disorder prediction 282 319 - -
Vra5g0897 349 ProSiteProfiles AP2/ERF domain profile. 160 217 IPR001471 GO:0003700|GO:0006355
Vra5g0897 349 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 348 - -
Vra5g0897 349 SUPERFAMILY DNA-binding domain 160 218 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0897 Vra-Chr5 15050865 15052807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0897 1 349 AP2-EREBP Transcription Factor Family AT1G78080 54.324 1.15e-101 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra5g0897 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0897 K09286 - gmx:100800478 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0996 6 12636785 12638648 Vra5g0897 5 15050865 15052807 PCT