Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0895 ATGGCTGTGCTTAGCGGGTTTTGGAGCCTGCCCCATAAGAATCTTGTGAAAAGGTTGGAAGGAGCTAAAGTTGGTGCTTGGGTTGATTCAATGAGAGCCTCCTCCCCAACTCGTGCCAAATCAGAAAGCCAAGAAAAAAGATACTGGATTCTTTATCATCCTTCAGCTCTGAATACCTTCGAGCAAATAACATATAATTCCAAAGGCAAGCAGGTTGTAGTTTTTCTTGACTACGATGGAACACTCTCCCCTATCGTTACGGATCCGGACAAAGCCTTCATGAGTCGAAAGATGAGAGCCACGCTGAAGGGAATCGCAAGACATTTTCCCACAGCAATCGTGACCGGGAGGTGCAGGGACAAGGTCTATAACTTTGTGAAACTGGCAGAACTTTACTATGCCGGGAGCCATGGCATGGACATCAAGGGGCCAACAAAAAGCCGAAGTCCAAAGCAAGGTAATAATAAAGCAGTACTGTTCCAACCCGCTAGTCAATTCCTGCCCATGATCAATGAGGTGTACAAGGTGTTGTTAGAGAAAACAAAGTCTGTCCCAGGGGCTAAGGTCGAGAACAACAAGTTTTGCTTGTCCGTTCACTTTCGTTGTGTTGACGAAAAGAGCTGGGCATCCCTAGCGGAGAAAGTTAGATTGGTGCTCACTGAGTACCCACAACTTAAGCTAACCCAAGGCAGAAAAGTGCTAGAGATTCGTCCAACCATCAAATGGGACAAGGGAAAGGCTCTTGAATTTTTGTTAGAATCATTAGGATACGAAAATTCGAGTGATGTGTTTCCAATCTATATTGGTGATGATCGAACAGATGAGGATGCTTTTAAGGTTTTACGCAGTAGGGGTCAAGGAATTGGGATACTTGTTTCTAGAGTTGCAAAAGAAACAGATGCTTCCTACACCTTGCAAGATCCATCAGAGGTTGAGCAATTCTTGCGGAGATTGGTGGAATGGAAAAGATCCAGTAGTGTGAAGTGCACAGAGTTGTAG 999 0.4484 MAVLSGFWSLPHKNLVKRLEGAKVGAWVDSMRASSPTRAKSESQEKRYWILYHPSALNTFEQITYNSKGKQVVVFLDYDGTLSPIVTDPDKAFMSRKMRATLKGIARHFPTAIVTGRCRDKVYNFVKLAELYYAGSHGMDIKGPTKSRSPKQGNNKAVLFQPASQFLPMINEVYKVLLEKTKSVPGAKVENNKFCLSVHFRCVDEKSWASLAEKVRLVLTEYPQLKLTQGRKVLEIRPTIKWDKGKALEFLLESLGYENSSDVFPIYIGDDRTDEDAFKVLRSRGQGIGILVSRVAKETDASYTLQDPSEVEQFLRRLVEWKRSSSVKCTEL* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0895 332 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 74 283 IPR006379 -
Vra5g0895 332 CDD HAD_TPP 73 311 - -
Vra5g0895 332 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 18 327 IPR044651 GO:0004805|GO:0005992
Vra5g0895 332 Pfam Trehalose-phosphatase 75 309 IPR003337 GO:0003824|GO:0005992
Vra5g0895 332 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 18 327 - -
Vra5g0895 332 SUPERFAMILY HAD-like 73 321 IPR036412 -
Vra5g0895 332 TIGRFAM T6PP: trehalose-phosphatase 69 319 IPR003337 GO:0003824|GO:0005992
Vra5g0895 332 Gene3D - 72 165 IPR023214 -
Vra5g0895 332 Gene3D - 187 330 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0895 Vra-Chr5 15021245 15023917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0895 10 318 Trehalose Biosynthesis Gene Families AT1G70290 25.369 1.22e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0895 K01087 - gmx:100788641 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1000 6 12810730 12813595 Vra5g0895 5 15021245 15023917 PCT