Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0891 ATGGCGTCACTCAATCCGCAGCCTCTGCAGTTCCAGGTCCCTGCGATACCCGTCCACGACGACGATGACACTGACGCCGCTGATGATGCTGCTATGGATGAGTTCGAGGATGCGCATGTTACTTCAGTCAACGTCGTTGCTAATGCTGCCAGTCCCAACCAAGAACCGCTGTCTGCTTTGCCTTCCAGAACTAGCGAGCTCACTCTTTCTTTCGAGGGTGAGGTTTATGTCTTTCCCGCAGTCACTCCTCAGAAGGTTCAAGCCGTCTTGATGCTTCTGGGAGGACGTGATGTGCACGCAGGTGTGCCTGCTGTTGAACTACCATTTGATCAAAGTAACAGGGGTATGGGTGATACTCCGAAGCTTTCGAACCTTTCACGAAGAATTGCATCTTTGGTCAGATTCCGCGAGAAACGAAAGGAAAGATGTTTTGACAAGAAAATTAGGTATACTGTGAGAAAAGAGGTGGCACAGAGGATGCATAGGAAGAATGGGCAGTTTGCATCCTTGAAAGAAAGCCCAGGGTCATCTAACTGGGATTCTGCCCGGAGTTCTGCTCAAGATGGCACTTCTCATTCTGAATCTGTACGCAGATGTCACCATTGTGGTGTCACTGAAAATAATACTCCTGCAATGCGTCGGGGGCCAGCTGGACCAAGGACTTTATGTAATGCATGCGGCCTTATGTGGGCAAACAAGGGCACACTCAGAGATCTCAGCAAGGGAGGAAGAAATCTTTCTGTTGAGCAAAGTGATCTGGATATTCCTATTGATGTCAAGCCTACTTCTGTTATTGAAGGAGAATTGCCCGGCATCCATGATGAGCAAGGTAGTTCTGAAGATCTGTCCAAGTCCAACACAGGTGATGGCTCTAGTGGTCATGCAGTAAACCCTAGTGATGAGGAATTGCCCGAAACTGCAGACCACTTTACGAATGCTCCGCCATTAGGACTTGTTCATTCTTCAAGGAGTGACACTGAACAGGAACCTCTGGTTGAACTTTCTAATCCTTCAGATACAGACATTGACATTCCAGGAAACTTTGATTAG 1050 0.48 MASLNPQPLQFQVPAIPVHDDDDTDAADDAAMDEFEDAHVTSVNVVANAASPNQEPLSALPSRTSELTLSFEGEVYVFPAVTPQKVQAVLMLLGGRDVHAGVPAVELPFDQSNRGMGDTPKLSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESPGSSNWDSARSSAQDGTSHSESVRRCHHCGVTENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSDLDIPIDVKPTSVIEGELPGIHDEQGSSEDLSKSNTGDGSSGHAVNPSDEELPETADHFTNAPPLGLVHSSRSDTEQEPLVELSNPSDTDIDIPGNFD* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0891 349 MobiDBLite consensus disorder prediction 269 349 - -
Vra5g0891 349 ProSiteProfiles CCT domain profile. 128 170 IPR010402 GO:0005515
Vra5g0891 349 PANTHER GATA TRANSCRIPTION FACTOR 28 1 349 IPR045280 GO:0006355
Vra5g0891 349 Pfam tify domain 62 94 IPR010399 -
Vra5g0891 349 Pfam CCT motif 128 169 IPR010402 GO:0005515
Vra5g0891 349 ProSitePatterns GATA-type zinc finger domain. 199 226 IPR000679 GO:0006355|GO:0043565
Vra5g0891 349 MobiDBLite consensus disorder prediction 317 335 - -
Vra5g0891 349 SMART GATA_3 193 246 IPR000679 GO:0006355|GO:0043565
Vra5g0891 349 MobiDBLite consensus disorder prediction 161 198 - -
Vra5g0891 349 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 243 - -
Vra5g0891 349 ProSiteProfiles GATA-type zinc finger domain profile. 193 252 IPR000679 GO:0006355|GO:0043565
Vra5g0891 349 SMART tify_2 60 95 IPR010399 -
Vra5g0891 349 Pfam GATA zinc finger 199 235 IPR000679 GO:0006355|GO:0043565
Vra5g0891 349 MobiDBLite consensus disorder prediction 169 192 - -
Vra5g0891 349 CDD ZnF_GATA 198 242 IPR000679 GO:0006355|GO:0043565
Vra5g0891 349 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 349 - -
Vra5g0891 349 Gene3D - 193 246 IPR013088 GO:0006355|GO:0008270
Vra5g0891 349 ProSiteProfiles Tify domain profile. 60 95 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0891 Vra-Chr5 14953883 14959868 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0891 5 241 Tify Gene Family AT1G51600 48.425 2.69e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vra5g0891 CCT 1.3e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0891 - - vun:114164157 620.542