Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0885 ATGAGGAAGAAAAGGAAAGGAAGCGAGGCCGATGCGTCTGCTGATCTGCCTGTTATTTTGTCTCCAAATCTTGGCTCTGCTTCGTCGAATTTGAAGTCCCATTATTCGCTAGAGGATTGTTCTAGGCTGAAGAAGAGGTGTTGTAAGGAGGAGGATGCTGCCACTGAGCCAGCTGCTTCCTTTAAAAGGAGGCTTGCCGGCATTGCCACTGCCCCGCCTTGTGGGACTTCTTCGTTGATCACGCCGGGGCGAGGGCTTAAGAGGAAGATTGGATGCATCGATGTTGCTACCCAGATGGGCAGGAAGAAGAAGATTGAGGATGATTATGTGACTGGTGAGACGATTGGGCAAGGCAAGTTTGGGTCTGTTTGGCTGTGTCGGTCCAGGGTTAGCGGAGCAGAATATGCATGTAAGACCTTGAGGAAGGGGGAGGAGACGGTTCACCGAGAGGTTGAGATAATGCAACACTTGTCCGGTCATTCTGGGGTTGTGACACTGCAAGCAGTTTATGAGGAAGCTGATTGCTTTCATCTTGTAATGGAATTGTGCTCTGGGGGACGACTAATCGATCAGATGGTTAAGGATGGTCCTTATTCAGAGCAGAAGGCTGCTAATGTACTCAAGGAAGTGATGTTGGTCATCAACTATTGTCATGACATGGGAGTTGTGCACAGAGATATCAAACCTGAGAATATACTGCTCACAGCATCTGGGAAAATAAAGCTTGCAGATTTTGGTTTGGCCATGAGAATTTCCGAAGGTCAGAACTTGACTGGTTTGGCGGGAAGCCCTGCCTATGTTGCCCCAGAAGTATTGTTAGGCAGATACTCTGAGAAGGTGGATATATGGAGTGCTGGAGTGCTTCTGCATGCTCTGTTGGTTGGCAGTCTTCCATTTCAAGGAGATTCATTGGAAGCAGTTTTTGAGGCTATTAAGACCGTCAAATTAGATTTCCAAACTGGGATGTGGGAATCAATATCTAAACCTGCGCGAGATCTTATTGGGAGAATGCTAACAAGGGATATCTCAGCTAGGATATCAGCTGACGAAGTACTTAGACATCCATGGATATTGTTCTACACGGCACAGACATTGACGATGCTGCCCATCAAATCAAAATTGAAGAACCAAATTGGCGCAACAACTCAACAGTTTGTTGCTGTTCCTGAACCAGGATTAGGAGGGAATAGAATAGATAATTACTCACTTAGCGAGGGTTCATTCTCCGAAAGTTGCACTTCAGATGATCAGGATGAATCTGTGTTGATTGATGTGCTTGCCTCTGCAATTTCGCATGTGAGGATATCTGAACCGAAGAGGAGCAGGGTGTGTGGTCCCACAGGTCCGATAGTTCAACAAGGTTCATCTAACATGAAGCCTAACAACCTTTGTAAAGCATTTTAA 1404 0.4623 MRKKRKGSEADASADLPVILSPNLGSASSNLKSHYSLEDCSRLKKRCCKEEDAATEPAASFKRRLAGIATAPPCGTSSLITPGRGLKRKIGCIDVATQMGRKKKIEDDYVTGETIGQGKFGSVWLCRSRVSGAEYACKTLRKGEETVHREVEIMQHLSGHSGVVTLQAVYEEADCFHLVMELCSGGRLIDQMVKDGPYSEQKAANVLKEVMLVINYCHDMGVVHRDIKPENILLTASGKIKLADFGLAMRISEGQNLTGLAGSPAYVAPEVLLGRYSEKVDIWSAGVLLHALLVGSLPFQGDSLEAVFEAIKTVKLDFQTGMWESISKPARDLIGRMLTRDISARISADEVLRHPWILFYTAQTLTMLPIKSKLKNQIGATTQQFVAVPEPGLGGNRIDNYSLSEGSFSESCTSDDQDESVLIDVLASAISHVRISEPKRSRVCGPTGPIVQQGSSNMKPNNLCKAF* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0885 467 SMART serkin_6 109 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0885 467 CDD STKc_CAMK 108 356 - -
Vra5g0885 467 ProSiteProfiles Protein kinase domain profile. 109 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0885 467 Gene3D Transferase(Phosphotransferase) domain 1 100 389 - -
Vra5g0885 467 SUPERFAMILY Protein kinase-like (PK-like) 100 386 IPR011009 -
Vra5g0885 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Vra5g0885 467 PANTHER SERINE/THREONINE-PROTEIN KINASE PEPKR2 24 459 - -
Vra5g0885 467 Pfam Protein kinase domain 109 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0885 467 PANTHER SERINE/THREONINE-PROTEIN KINASE 24 459 - -
Vra5g0885 467 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0885 Vra-Chr5 14865089 14867874 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0885 99 357 EF-hand Containing Proteins AT4G35310 44.815 3.25e-78 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vra5g0885 Pkinase 1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0885 - - gmx:100812729 870.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0885 5 14865089 14867874 Vra5g0885 5 14865089 14867874 ECH
Vra6g1285 6 24381859 24385508 Vra5g0885 5 14865089 14867874 PCT