Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0879 ATGATCACTCTGCCACTCACCACCTTCCACCATGACCTTTTTCTTTTTTACTGTTATTTTATTCTCCTCACGCACTTTCCGCCGCCGGCCGCCGCGCAGCTTCCCAACCAACTCACACCACCGCCGCCGGACCGCTTATCCAAGATGAAGTTCGATAAGTCCATGGCCATCGTTCTGGTCATCCTGGTCGCGGTCTTCTTCTTCCTCGGGTTCCTCTCCGTGTACACGCGCCAGTGCGCGGAGCGAAGGATGCGAGGGAGGTTCGACTTGTCTATCTCGATCACGCGTCGGCCACGTGGTCTTGACCGCGAAATCATCGAGACCTTCCCCACCTTCGTATACTCCACCGTGAAGAGCCTCAAGATAGGACGCGCCACGCTAGAATGCGCCGTGTGCCTGAACGAGTTCGAGGAGGAGGAAACGCTGCGTTTGATACCCAAGTGCAGCCACGTGTTCCACCCCGAGTGCATCGACGCGTGGCTCGCCAATCACTCCACTTGTCCCGTCTGTCGTGCCAACCTTGTCCCCAAACCCGACGACCCCTCCTTTGTTTCCATCCCAATCCCGGATCCGGTTCAACCCGTTTTAAACTCCCCGGTCCAACCTGAACCCACGGTTTCTCCCAAGCCCAATGATTTCATTAATCGCAACCGTTCACCTCGGTCAAGGTCAACGGGTTTCAGCATCGCAAGCTTGATTCCGCGATCTCACTCGACGGGTCACTCGCTGGTTCAACCGGGAGAGAATTGCGAGCGGTTCACTCTGCGTTTGCCCGAGGAAGTGCGGAACCAGCTGATGACTTCCACGACGCTGAGTCGCACCAAGAGTTGCGGCTTGAGCCTGGGACTCACGCGCGAGAACAGTGGGAGGAGGGGTTACAGGACCAGAAGCGTTGGTCACAGTCTTAGTCCTCACGTGACAAGAGGCATGGATGGCAGCAGCAGCAGCAGCAGCCCTCACGTGCGTGGACACGACAGACGGTGGTTTTTTCAGAGCCCTCCGGCCAAGGACTCCATTAAGGAAGATGTCGGCGAACGTTCTTCGGATCGGCTTTTCTCGGAGACCACGAAGGATACTGATAATTAA 1086 0.5663 MITLPLTTFHHDLFLFYCYFILLTHFPPPAAAQLPNQLTPPPPDRLSKMKFDKSMAIVLVILVAVFFFLGFLSVYTRQCAERRMRGRFDLSISITRRPRGLDREIIETFPTFVYSTVKSLKIGRATLECAVCLNEFEEEETLRLIPKCSHVFHPECIDAWLANHSTCPVCRANLVPKPDDPSFVSIPIPDPVQPVLNSPVQPEPTVSPKPNDFINRNRSPRSRSTGFSIASLIPRSHSTGHSLVQPGENCERFTLRLPEEVRNQLMTSTTLSRTKSCGLSLGLTRENSGRRGYRTRSVGHSLSPHVTRGMDGSSSSSSPHVRGHDRRWFFQSPPAKDSIKEDVGERSSDRLFSETTKDTDN* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0879 361 MobiDBLite consensus disorder prediction 196 225 - -
Vra5g0879 361 Pfam Ring finger domain 128 171 IPR001841 -
Vra5g0879 361 PANTHER RING-H2 FINGER PROTEIN ATL11 15 285 - -
Vra5g0879 361 MobiDBLite consensus disorder prediction 338 361 - -
Vra5g0879 361 SUPERFAMILY RING/U-box 123 179 - -
Vra5g0879 361 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Vra5g0879 361 SMART ring_2 129 170 IPR001841 -
Vra5g0879 361 CDD RING-H2_EL5_like 128 171 - -
Vra5g0879 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 176 IPR013083 -
Vra5g0879 361 MobiDBLite consensus disorder prediction 282 361 - -
Vra5g0879 361 MobiDBLite consensus disorder prediction 208 225 - -
Vra5g0879 361 PANTHER RING FINGER DOMAIN-CONTAINING 15 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0879 Vra-Chr5 14776741 14778024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0879 50 292 Rapid Response to Elicitors AT3G05200 46.304 1.57e-67 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0879 K10664 - gmx:100805815 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0879 5 14776741 14778024 Vra5g0879 5 14776741 14778024 ECH