Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0878 ATGGCGCTAGAGGCTGTGGTATTTCCGCAAGATCCGTTTCCATACGCTTGCAAGGATTATTTTTACTCCTTAGCAGGAGCAGCACCTGACTACGGTTTTCAAGCGGCGGAGGAAGAGAAACTCCTCCTAGGAATCATCAACAACAACATAGAAGACAACCAATACACAACCTGGGATTCTTCTTCTACCTCGGTCTTGCAAAATGTGAAGGAACAATGGGATTCTCACTCCTCCCCTGAAGCCTGCACCGTTGATGAATCCATGATCCCACCTCTTTCTTCCTCGGCGGAAGCCACCGCCACAGCCACGACTCGGCGGAAACGACGCCGTACGAAGAGCGCGAAGAACAAAGAGGAAATCGAAAACCAGAGGATGACCCACATTGCAGTTGAACGGAACCGCAGAAAGCAGATGAACGAGTACTTAGCGGTACTCCGATCCTTGATGCCCTCCTCTTACGTTCAGAGGGGTGACCAAGCGTCTATCATCGGAGGGGCCATTAACTTCGTGAAGGAGTTGGAGCAGGTTTTGCAGTCAATGGAGAGTGAAAAGAGACGGAAGCAGGGTGAAGAAGAAGAGAATGTTGGGTTGAATGGGTGGACGACACCCTTTGCCGAGTTCTTCACGTTTCCTCAGTACACGACACGTGGCACGCAGAAGCAGGAACAGAAACAGTGGGCCGTAGCAGACATTGAAGTCACCATGGTCGACAGTCATGCAAATCTGAAGATTCTCGCAAAGAAACAACCCTCCCATCTCATGAAGATCGTTCTCGGCCTTCAAACTCTCAGACTCACCATTCTCCACCTCAATGTCACCACTCTCCACCACATGGTCCTTTACTCCATCAGCGTAGAGGAGGGTTGCGAGCTCAACACGGTGGATGAAATTGCGGCGGCGGTGAATCAACTGTTAGGCACAATCCAAGAAGTTGCATTCAGCTCAATTAAACATAATTAA 960 0.499 MALEAVVFPQDPFPYACKDYFYSLAGAAPDYGFQAAEEEKLLLGIINNNIEDNQYTTWDSSSTSVLQNVKEQWDSHSSPEACTVDESMIPPLSSSAEATATATTRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQVLQSMESEKRRKQGEEEENVGLNGWTTPFAEFFTFPQYTTRGTQKQEQKQWAVADIEVTMVDSHANLKILAKKQPSHLMKIVLGLQTLRLTILHLNVTTLHHMVLYSISVEEGCELNTVDEIAAAVNQLLGTIQEVAFSSIKHN* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0878 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 190 IPR036638 GO:0046983
Vra5g0878 319 Pfam Helix-loop-helix DNA-binding domain 123 174 IPR011598 GO:0046983
Vra5g0878 319 PANTHER MAX DIMERIZATION, MAD 1 312 - -
Vra5g0878 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 173 IPR011598 GO:0046983
Vra5g0878 319 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 312 - -
Vra5g0878 319 MobiDBLite consensus disorder prediction 91 118 - -
Vra5g0878 319 CDD bHLH_AtFAMA_like 125 195 - -
Vra5g0878 319 SMART finulus 128 179 IPR011598 GO:0046983
Vra5g0878 319 Coils Coil 170 193 - -
Vra5g0878 319 Gene3D - 112 198 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0878 Vra-Chr5 14743763 14745436 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0878 1 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G22490 48.993 1.13e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra5g0878 HLH 4.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0878 - - gmx:100789380 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0878 5 14743763 14745436 Vra5g0878 5 14743763 14745436 ECH