Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0875 ATGGCGCTTCTACGTGTTGCGTGCTTAACTTCTGCAAATCAGTTATCGGCTCAAACCTATTCCCATTCCATCGCTCTCTCTTCCCTTTCCCAATCCATCAACTTCCCCAAACGCTCTTCCTTTCACCTTCCACCCTTATCCCTTACCACAGCCAAACAAACCCCTAATTTCACTCTCACCTGCGTTTCCACTTCCCAACAACAACCCCAGCCAGTTACCGAAGAAGAATTTTCTCGCACAAGGTTGCTCGCTCAGAACGTCCCATGGACAAGCACCCCAGAGGATATTCGTTCTTTGTTTGAAAAACATGGAAAAGTCCTCGAAGTCGAGCTTTCTATGTATAAGAAAAACAGAAACCGGGGTTTGGCCTTCGTCGAAATGGGTTCTCCTGAAGAGGCTCTTGAAGCTCTCAATAAACTCGAATCGTATGAGTTTGAGGGCCGTGTAATGAAAGTCAATTATGCTCGGCCGAAAAAGAAGAAAACCCCGCCTCCGGTGAAACCAAAATCTGGGGTCACGTTTAACTTGTTTGTTGGTAACTTGTCTTATGAAGCCAAGTCCAAGGATCTCAAGGAGTTTTTTGATTCCGGAACTGCTAAAGTTGTTAGAGCTGAGGTTGTATTTCTTGACAATCCTAGAAAGCCGTCAGGTTATGGATTTGTGTCATTCAAGTCCAAGAAAGAAGCTGAGGCTGCTCTTGCTGAGTTCCAAGGAAAGGATTTTATGGGAAGGGCAATCAGGGTGGATCGGGGTCGTCGATTTGTTCAGAAGCCTGGGGATGGGAATTCAAAGTCTGTCGTAGATGCTCCTTCTGAGTTGAGTGTGAATGGGGCAGAAACTCAAGAGCCAGCAGAGGAGACTCCAAACTCTGAAGATACTCCTGAGTTGAGTGTGAATGGGGCAGAAGCTGACAAAGCTGATTGA 924 0.4632 MALLRVACLTSANQLSAQTYSHSIALSSLSQSINFPKRSSFHLPPLSLTTAKQTPNFTLTCVSTSQQQPQPVTEEEFSRTRLLAQNVPWTSTPEDIRSLFEKHGKVLEVELSMYKKNRNRGLAFVEMGSPEEALEALNKLESYEFEGRVMKVNYARPKKKKTPPPVKPKSGVTFNLFVGNLSYEAKSKDLKEFFDSGTAKVVRAEVVFLDNPRKPSGYGFVSFKSKKEAEAALAEFQGKDFMGRAIRVDRGRRFVQKPGDGNSKSVVDAPSELSVNGAETQEPAEETPNSEDTPELSVNGAEADKAD* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0875 307 MobiDBLite consensus disorder prediction 252 307 - -
Vra5g0875 307 SUPERFAMILY RNA-binding domain, RBD 173 258 IPR035979 GO:0003676
Vra5g0875 307 MobiDBLite consensus disorder prediction 267 284 - -
Vra5g0875 307 CDD RRM_SF 86 153 - -
Vra5g0875 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 151 IPR000504 GO:0003723
Vra5g0875 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 247 IPR000504 GO:0003723
Vra5g0875 307 SUPERFAMILY RNA-binding domain, RBD 64 166 IPR035979 GO:0003676
Vra5g0875 307 Gene3D - 60 160 IPR012677 -
Vra5g0875 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 157 IPR000504 GO:0003723
Vra5g0875 307 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 1 281 - -
Vra5g0875 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 253 IPR000504 GO:0003723
Vra5g0875 307 PANTHER OS08G0483200 PROTEIN 1 281 - -
Vra5g0875 307 SMART rrm1_1 175 249 IPR000504 GO:0003723
Vra5g0875 307 SMART rrm1_1 81 153 IPR000504 GO:0003723
Vra5g0875 307 CDD RRM_SF 176 249 - -
Vra5g0875 307 Gene3D - 161 265 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0875 Vra-Chr5 14689957 14692101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0875 80 256 Eukaryotic Initiation Factors Gene Family AT3G16380 28.646 3.37e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0875 - - gmx:100790439 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0875 5 14689957 14692101 Vra5g0875 5 14689957 14692101 ECH