Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0863 ATGGAGTCTCGGAGAGATCGCAGGACAGAAGCTCTTGGAGACCTTCGAGTCCTTCCCGACGAAATCCTCTGCGCGATTTTGGAACGTTTCACTCCCAGAGATGTTGCTCGGGTGGCTTGTGTTAGCAGTGTGATGTACACACTATGCAACGAAGAACCGCTGTGGATGAGTCTATGCCTAAAAGAAGCGACGGGTTTGCTGCAATACAAAGGCTCTTGGAAGAAAACTGTTCTGCATAATTTGAATCTGCCCGACAAATACAAAGAATACCATAGAGGACCTTTATATTTTGATGGCTTCAACTCTTTATTTTTGTACAGGAGATTATACCGCTGTCATACCACATTGGGTGCATTTCATGCGGATACTGGAAATTTGGAAAGAATAAAAGACATCTCATTGAAGGACTTCTATAATGAGTATGATGCAAAGAAACCGGTTATGCTCAGTGGATTGGCTGATACATGGCCCGCCAGGCATAAATGGACAACTGATCAGCTGTTGCTAAACTACGGAGATGTAGCATTTAAAATTTCTCAACGGGGCGCCCGGAAGATCTCCATGAAATTCAAGGATTATGTCTCGTACATAAAAGTTCAGCATGATGAAGATCCCTTGTATATTTTTGATGAAAAGTTTGGTGAAGCTGCACCTAGCTTATTGAAGGATTATTGTGTGCCTCATCTTTTTGAAGAAGACTTCTTTGATATCTTAGACACAGATAAAAGACCATCCTATAAGTGGCTCATAATTGGACCAGAGAGATCCGGTGCCTCTTGGCATGTTGATCCAGCTCTTACCAGTGCATGGAATACTCTTCTTTGTGGGCGTAAAAGGTGGGCATTATATCCGCCAGGAAAAGTGCCTTTGGGTGTGACTGTTCATGTTAATGAAGAAGACGGTGATGTCAATGTTGAGACTCCATCATCACTGCAGTGGTGGCTAGACTTTTATCCTCTTCTTGCTGACGAGGACAAGCCAATTGAGTGTACACAGCTACCTGGAGAAACAATTTATGTTCCAAGTGGATGGTGGCACTGTGTGCTAAATTTGGAAACAACTATTGCTGTCACGCAGAATTTTGTGAATTCCAACAATTTCGAATTTGTATGTTTGGATATGGCACCTGGTTATCATCATAAAGGAGTTTGCCGTGTTGGGTTACTGGCTCTTGATGAAGATAGTTATGAAAATGTCAGACAGAACATACCATGTAATGAAAATAACTCAAGTTACAATGATTTGTCAAGGAAAGAGAAAAGAGCCAAAATTCAGAAAGATGCTGATGGTATATATAACAAAAGAGCCATAAATGGTGTATCTAGAAGCTACAATTTATGGAAAGATGGATTTTCCTATGATATAAACTTCTTATCCATGTTTTTGGATAAAGACAGAGACCACTACAGTTCCTTGTGGAGCTCAGGAAACAGCATTGGTCAGCGAGAACTAAGAGAATGGCTATCCAAGCTCTGGATTCAAAAACCAAAATTAAGAGAGCTAATATGGAAGGGAGCATGTATTGCACTAAATGCCAACAAGTGGTTAGAATGCCTATCAAAAATTTGTGCCTTCCATAATTTGCCCCCTCCCACTGACGATGAAAGGCTTCCAGTTGGTACCGGTAGCAATCCTGTTTATTTAGTGGGAAACACTGTTGTTAAGATTTTTGTTGAAGGAGGACTGGAAGCTTCACTTTATGGTTTAGGCACAGAGCTAGAGTTTCAGAGTCGGTTGCATGAAGCCAACTCTCCGCTTAGTAAACATATACCTGATGTTTTGGCCAGCGGAATTATTTATCTTGAAAATGGATCTTGTACCAATTTAAGTTGGGATGGAAAAGGTGTACCTGATATCATTGTGAAAAACAATATCACCAGTAGGAAATGCAGTGTTGATGATTTCTCATTTGGGGTGTGGGGCAGGAAACAGTTAGAGTATAGGAATGCTGGGATGCCTGTGAATGAATCAGGTAGCTTAGCTGGTAACTCAAACATATGGCCATATGTGATAACAAAACGATGTGCAGGGAATATGTTTGCAGAATTAAGAGATAAACTGACATGGGAAGATACAACAAACTTGGCCTCATTCTTGGGGGAGCAACTGCATTATCTTCATCTTTTGTCATATCCGCCTCCAAATATCTCATCTTTCTCTGATATTGATCATGAATTAAGCTTGGTTGAGGCTAATGGTTATATTGCAACTGTTAACAGTAAATCAAATGTTACAGCAGAATGGTGGCTCTTCACCAGAACCTTAGCAAAGATGAGGAAAGATGTGTCAAGCCGTTTGACCAAGTGGGGTGATCCAATTCCTAGCAAACTCATTGAGAAGATTGATGAATATATTCCACCTGATTTTGCTGAGAAGTTTGGAAACTATGCTTGTAAACCTTGCTCCTGGATACACACGGACATTATGGACGATAACATTTACATGAAACCATCATTGGTTTGCTCTACCCCTGCTGGGAATAATGAAGGTAGCACCATGCTGGACAATGGTTTGTTGAGTAATCATGAAGTAAAATCATGGTGTCCTAGTCACATTCTTGACTTTAGTGATCTTTCAATAGGTGATCCTCTTGTTGACTTGATACCAATTTATTTAGATGTGTTTAGAGGTGATTCACGTCTCCTTAAGCAGTTTTTAGAAAGTTACAAACTTCCTTTTGTTCGTGAGGTATCAAGGTGGGAGTCAACAGAGGGTGATCAAAAGTTTGGCCGACTTTCATATCTTGCCATGTGTTATTGTATCTTGCATGATGACAATGTATTGGGAGCTCTTTTTAGCATATGGGAAGAACTGAGGTCAGCACAGTCATGGGAAGAAGTTGAGCTGGCAGTGTGGGGGGAACTGAACAATTACAAAGGCTTTCCGTGA 2889 0.4078 MESRRDRRTEALGDLRVLPDEILCAILERFTPRDVARVACVSSVMYTLCNEEPLWMSLCLKEATGLLQYKGSWKKTVLHNLNLPDKYKEYHRGPLYFDGFNSLFLYRRLYRCHTTLGAFHADTGNLERIKDISLKDFYNEYDAKKPVMLSGLADTWPARHKWTTDQLLLNYGDVAFKISQRGARKISMKFKDYVSYIKVQHDEDPLYIFDEKFGEAAPSLLKDYCVPHLFEEDFFDILDTDKRPSYKWLIIGPERSGASWHVDPALTSAWNTLLCGRKRWALYPPGKVPLGVTVHVNEEDGDVNVETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCVLNLETTIAVTQNFVNSNNFEFVCLDMAPGYHHKGVCRVGLLALDEDSYENVRQNIPCNENNSSYNDLSRKEKRAKIQKDADGIYNKRAINGVSRSYNLWKDGFSYDINFLSMFLDKDRDHYSSLWSSGNSIGQRELREWLSKLWIQKPKLRELIWKGACIALNANKWLECLSKICAFHNLPPPTDDERLPVGTGSNPVYLVGNTVVKIFVEGGLEASLYGLGTELEFQSRLHEANSPLSKHIPDVLASGIIYLENGSCTNLSWDGKGVPDIIVKNNITSRKCSVDDFSFGVWGRKQLEYRNAGMPVNESGSLAGNSNIWPYVITKRCAGNMFAELRDKLTWEDTTNLASFLGEQLHYLHLLSYPPPNISSFSDIDHELSLVEANGYIATVNSKSNVTAEWWLFTRTLAKMRKDVSSRLTKWGDPIPSKLIEKIDEYIPPDFAEKFGNYACKPCSWIHTDIMDDNIYMKPSLVCSTPAGNNEGSTMLDNGLLSNHEVKSWCPSHILDFSDLSIGDPLVDLIPIYLDVFRGDSRLLKQFLESYKLPFVREVSRWESTEGDQKFGRLSYLAMCYCILHDDNVLGALFSIWEELRSAQSWEEVELAVWGELNNYKGFP* 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0863 962 Gene3D - 7 89 - -
Vra5g0863 962 PANTHER JMJC DOMAIN-CONTAINING PROTEIN 8 4 895 - -
Vra5g0863 962 SUPERFAMILY F-box domain 7 74 IPR036047 GO:0005515
Vra5g0863 962 SMART cupin_9 210 373 IPR003347 -
Vra5g0863 962 Gene3D Cupin 112 363 - -
Vra5g0863 962 ProSiteProfiles F-box domain profile. 12 58 IPR001810 GO:0005515
Vra5g0863 962 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 4 895 - -
Vra5g0863 962 ProSiteProfiles JmjC domain profile. 215 378 IPR003347 -
Vra5g0863 962 SUPERFAMILY Protein kinase-like (PK-like) 667 894 IPR011009 -
Vra5g0863 962 SUPERFAMILY Clavaminate synthase-like 119 370 - -
Vra5g0863 962 Pfam Cupin-like domain 143 365 IPR041667 -
Vra5g0863 962 Pfam F-box-like 17 61 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0863 Vra-Chr5 14559881 14570958 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0863 4 958 Glycosyltransferase AT1G78280 60.556 0.0 1204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vra5g0863 Cupin_8 3.5e-21 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0863 - - gmx:100792541 1779.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0863 5 14559881 14570958 Vra5g0863 5 14559881 14570958 ECH