Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0859 ATGAGTGAGACAGCCAGTCTTCATGCACAGACAAGGACACCCATTTCTTCTCTTGAAGCCATGGCTCATCACCACCCTCATTATCGATCACCCTTCGGAGACACTACCTTCACCAAACTCTTCGTCGGAGGACTAGCCTGGGAGACTCCCACCGAAGAAATGCGCAAATATTTCCAACAGTTCGGTGACATTCTTGAAGCTGTCATAATCACTGACAAGAACACCGGAAAATCCAAAGGCTACGGTTTCGTAACATTCTGCGACCAAGAATCAGCAAGAAGAGCATGTGCTGATCCAAATCCAATAATAGATGGCAGAAGAGCAAATTGTAATATTGCTTCTCTGGGAAGGACTCGACCTTCACCACCTCGAGGGAGGAATATAGTTCAAGGTGGAGGAGGAACAACAGTACAGAGTGTTCCGGGAGCGGGAGCGCCGCCGTCGCTGCCGCCAGCACCTGCTGTTCTGTATCCGCCATATGGCTACGCAGCCTACACTCCTGATTATGGATACCACCACCAAGCCACATTGTACAACCCACAGATTCAGCAACCACAATACTATCAACAAGTATACGGAGCATCATCTTCCACCATGAGCACCCCGTATTACTATGGTTACTCTGTGCAAGCACCAAGAAACACATTTTCCTCACCCCAGGCAAATCGCCTATCACCTGGACCATCCTATCTGTACTATCCTACACCCGTGGAAGTCTCATTCTCTGCATATCGCCCACTCCAATCACCAGTGACCCAAAACTTTCCTTCTCCAACTGATTCACAGAGTCAGCAGCGTATCTCCTCTGAAACAGCAGCCACTTCAGAAAGTTCAAATACCCAAGGGAAGAACTAA 855 0.4854 MSETASLHAQTRTPISSLEAMAHHHPHYRSPFGDTTFTKLFVGGLAWETPTEEMRKYFQQFGDILEAVIITDKNTGKSKGYGFVTFCDQESARRACADPNPIIDGRRANCNIASLGRTRPSPPRGRNIVQGGGGTTVQSVPGAGAPPSLPPAPAVLYPPYGYAAYTPDYGYHHQATLYNPQIQQPQYYQQVYGASSSTMSTPYYYGYSVQAPRNTFSSPQANRLSPGPSYLYYPTPVEVSFSAYRPLQSPVTQNFPSPTDSQSQQRISSETAATSESSNTQGKN* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0859 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 115 IPR000504 GO:0003723
Vra5g0859 284 SUPERFAMILY RNA-binding domain, RBD 21 133 IPR035979 GO:0003676
Vra5g0859 284 MobiDBLite consensus disorder prediction 248 284 - -
Vra5g0859 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 97 IPR000504 GO:0003723
Vra5g0859 284 Gene3D - 5 134 IPR012677 -
Vra5g0859 284 CDD RRM_RBM24_RBM38_like 38 113 - -
Vra5g0859 284 PANTHER GEO13361P1-RELATED 24 277 - -
Vra5g0859 284 SMART rrm1_1 39 111 IPR000504 GO:0003723
Vra5g0859 284 PANTHER - 24 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0859 Vra-Chr5 14496389 14500693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0859 34 114 C2H2 Transcription Factor Family AT2G19380 38.272 5.81e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0859 K25006 - gmx:100811977 466.848