Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0853 ATGGATAAGTTGTGCTGTTTTAAGGCTTCTTACTCTCAGCTTGTAGCAGCACGTTCTTCATCCAGCACTGGTAAGGGGAAAAATCATGAAGGCTCAATAAAGTATGGTTTCAGCCTTGTGAAAGGGAAAGCTAATCACCCAATGGAGGACTATCATGTTGCCAAGTTTGCTCAGATAAAAGACAATGAATTGGGTTTATTTGCTATCTATGATGGCCATTTGGGTGACCGTGTGCCTGCCTACTTACAGAAACATTTGTTTACCAACATTCTGCGGGAGGAGGAATTTTGGGAAGACCCCACTCTTTCCATCTCAAAAGCTTACGAGATCACAGATCAGGAAATTCTATCAAACAGTTCTGACCTTGGGCGTGGTGGATCAACAGCCGTAACTGCTATATTGATCAATGGGCGAAGGTTATGGATAGCTAATGTTGGAGACTCACGAGCTGTTCTTTCTAGAAAAGGTCAAGCTTTACAAATGACTATAGACCACGAGCCAAACATGGAACGAGGTAGCATTGAGAATAGAGGTGGCTTTGTCTCTAATTTGCCAGGTGATGTGCCTAGAGTAAATGGACAACTTGCTGTTTCTCGAGCATTTGGTGACAAGAGTCTCAAGTCACATTTGCGATCAGACCCTGATGTGCAGAACACTGACATAGATGTTGATACTGAGATTCTAATAATTGCAAGTGATGGACTTTGGAAGGTGATGACTAATCAAGACGCTGTGGATATTGCTAGAAGATCGAAAGACCCACAGAAGGCAGCTAAGCAACTTACTGCTGAAGCATTAAAAAGAGATAGTAAAGATGATATATCTTGTGTTGTGGTTAAATTCAGGTGA 849 0.4205 MDKLCCFKASYSQLVAARSSSSTGKGKNHEGSIKYGFSLVKGKANHPMEDYHVAKFAQIKDNELGLFAIYDGHLGDRVPAYLQKHLFTNILREEEFWEDPTLSISKAYEITDQEILSNSSDLGRGGSTAVTAILINGRRLWIANVGDSRAVLSRKGQALQMTIDHEPNMERGSIENRGGFVSNLPGDVPRVNGQLAVSRAFGDKSLKSHLRSDPDVQNTDIDVDTEILIIASDGLWKVMTNQDAVDIARRSKDPQKAAKQLTAEALKRDSKDDISCVVVKFR* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0853 282 Gene3D - 29 282 IPR036457 -
Vra5g0853 282 CDD PP2Cc 33 281 IPR001932 -
Vra5g0853 282 SMART PP2C_SIG_2 45 281 IPR001932 -
Vra5g0853 282 SMART PP2C_4 30 279 IPR001932 -
Vra5g0853 282 PANTHER PROTEIN PHOSPHATASE 2C 10-RELATED 1 281 - -
Vra5g0853 282 SUPERFAMILY PP2C-like 32 281 IPR036457 -
Vra5g0853 282 PANTHER PROTEIN PHOSPHATASE 2C 1 281 IPR015655 GO:0004722|GO:0006470
Vra5g0853 282 Pfam Protein phosphatase 2C 43 274 IPR001932 -
Vra5g0853 282 ProSiteProfiles PPM-type phosphatase domain profile. 34 281 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0853 Vra-Chr5 14386702 14389686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0853 1 282 PP2C-type Phosphatase Gene Family AT1G22280 73.264 1.15e-152 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0853 K17506 - gmx:100797292 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0853 5 14386702 14389686 Vra5g0853 5 14386702 14389686 ECH