Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0835 ATGGCGGCTTCAGTCCACAACCGTCCGTTCACCGTCCACCAACACACCGTCGTTCGCTCCTACAAGCCCGCTCCGGAACTCCCGCGTCCTATCAAGTTACCCCTCCCACCACCACTCTCCGATTCCTCAAGCGACGACGAAGAAGAAACCACTGTGTTGAAGGAACTCATTCTAAAGTCCAGCGTGGAAGTTGAATCCTCCATTTTCGACCCTCGCGACGATGGAACCTCCGACCACTGGGTCAAACGAAACGCTTCCCTGATCCGGTTGACGGGGAAGCACCCCTTAAACTCAGAGCCACCCCTCTCTCGTCTCATGCACCACGGTTTCATCACTCCGGTTCCCCTCCACTACGTCCGTAACCACGGACCCGTGCCACGGGCTCGCTGGGATGACTGGACCGTTGAGGTCAAGGGCCTCGTTAGTCGGCCCACGTGCTTCACCATGGAACAGCTGGTCAACGACTTTCCCATCCGCGAGTTCCCTGCCACACTTGTCTGCGCTGGGAACAGGCGCAAGGAACAGAACATGGTGAAACAGAGCATCGGCTTCCACTGGGGGCCCGCCGCCATATCTACTTCGGTGTGGCGCGGTATACCGTTGCGGGCCCTGTTGAAGCGGTGCGGTATCTACAGCCGCGCGAAGGGAGCCCTTCACGTGTGCTTCGAAGGCTCCGAGGATCTGCCAGCTGACGGTGGGTCAAAGTACGGGACCAGTATCACGAGGGAGGTTGCACTCGATCCCTCTCGCGACATCATCCTCGCTTATATGCAAAACGGGGAGCTTTTGTCCCCGGATCATGGCTTCCCCGTTAGGGTGATAATACCCGGTTTCGTCGGTGGCCGCATGGTGAAATGGTTGAAGCGGATCGTTGTCTCTACCCAGCAATCTGAAAGCTATTACCATTACATGGATAACAGGGTGCTTCCATCTCACGTTGACGCCGAACTTGCCAATGCAGAAGCTTGGTGGTACAAGCCAGAGTATTGCATCAACGAGGTGAACATAAACTCCGTCATAACAACGCCCTCTCACGAAGAGATCTTGCCCATCAACTCATGGACTACTAAGATACCTTATTTCATCAGAGGCTACGCCTATTCTGGTGGGAGAAAGGTGACACGTGTGGAGGTAACGCTGGACGGTGGTGAAACGTGGCAAGTGTGCAGCGTGGAATGTCCGGAGAAGCCGAACAAATATGGGAAGTACTGGTGTTGGTGTTTCTGGTCCTTGGAGGTGGAGGTTTTGGATCTTCTCGCAGCAAAAGATATTGCGGTGCGAGCTTGGGACGAGGCCCTCAACACCCAGCCTCACAAACTCATCTGGAATCTTTTAGGAATGATGAATAACTGCTGGTTCAGAGTGAAGACGAACGTGTGCAAGCCGAAGAAGGGTGAGATTGGTATAGTGTTCGAGCACCCCACCCAACCAGGCAACCAATCTGGCGGATGGATGGAACGAGAGAGACAGCTGGAGATATCATCGGAGTCCAACCCATCCCTCAAGAAGAGTGTTTCCTCCCCATTCATGAACACATCCCCCAAAACCTATTCCATCTCCCAAGTCAGAAGACACAACAACAGAGATTCGGCTTGGATCATAGTCCACGGCCATGTCTACGATTGCACCCGCTTCCTCAAAGACCATCCTGGCGGCGCAGATAGCATCCTCATCAACGCCGGCACCGACTGTACCGAAGAGTTCGAAGCCATTCACTCCGAAAAAGCCATGGCAATGCTCGAAGACTACCGAATCGGTGAGCTCATGACCACCGACTACACCTCTGACTCCTCTTCCCCCAACTCCTCCGTACATGACAATTCTGAAACCACCCACTTGGCCCCAATCAGAGAAGTGGCTCTCAACCCACGCGAGAAAATCCCATGCAAGCTCCTCTCCAGAACCTCCATCTCCAACGACGTCAGGCTCCTCCGCTTTGCGTTACCCAGCGAGGACCAGCTGATGGGTTTGCCAGTCGGGAAGCACGTATTCTTATCTGCCACTGTCGACGAGAAGCTATGCATGCGAGCCTACACCCCCACAAGCAGCATAGATGAAGTGGGTATCTTTGACCTCCTCGTCAAGGTTTACTTCAAAGGAGTGCATCCTAAGTTCCCCGACGGTGGGGCCATGTCTCAACACTTGGACTCGCTCCCCATTGGCTCTGTCTTGGACGTGAAAGGCCCACTAGGCCACATAGAATACACCGGCAGAGGAAACTTCCTGGTCGAGGGGAAGCCTAGGTTTGCCAAGAGGCTAGCCATGTTGGCTGGTGGCACCGGGATCACACCCATCTACCAAGTGGTTCAAGCCATTGTAAAGGACCCAGAGGACCACACCGAAATGCATGTGGTATACGCGAATCGAACCGAGGATGATATATTGCTGAGAGAGGAGCTTGATGAATGGGCTAAGAAACATGACAGGCTGAAAGTGTGGTACGTGGTGCAAGAAAGCGTAAGAGAAGGGTGGGAATACAGTGTGGGGTTCATCACCGAGACTATCCTCCGAGAGCATGTTCCACCTGCATCTCCTGATACCTTGGCGTTAACTTGTGGTCCACCACCCATGATTCAGTTTGCGGTGCAACCCAATTTGGAGAAGTTGGGCTACGACATCCACAAAGACTTGCTCGTGTTTTAG 2643 0.5384 MAASVHNRPFTVHQHTVVRSYKPAPELPRPIKLPLPPPLSDSSSDDEEETTVLKELILKSSVEVESSIFDPRDDGTSDHWVKRNASLIRLTGKHPLNSEPPLSRLMHHGFITPVPLHYVRNHGPVPRARWDDWTVEVKGLVSRPTCFTMEQLVNDFPIREFPATLVCAGNRRKEQNMVKQSIGFHWGPAAISTSVWRGIPLRALLKRCGIYSRAKGALHVCFEGSEDLPADGGSKYGTSITREVALDPSRDIILAYMQNGELLSPDHGFPVRVIIPGFVGGRMVKWLKRIVVSTQQSESYYHYMDNRVLPSHVDAELANAEAWWYKPEYCINEVNINSVITTPSHEEILPINSWTTKIPYFIRGYAYSGGRKVTRVEVTLDGGETWQVCSVECPEKPNKYGKYWCWCFWSLEVEVLDLLAAKDIAVRAWDEALNTQPHKLIWNLLGMMNNCWFRVKTNVCKPKKGEIGIVFEHPTQPGNQSGGWMERERQLEISSESNPSLKKSVSSPFMNTSPKTYSISQVRRHNNRDSAWIIVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFEAIHSEKAMAMLEDYRIGELMTTDYTSDSSSPNSSVHDNSETTHLAPIREVALNPREKIPCKLLSRTSISNDVRLLRFALPSEDQLMGLPVGKHVFLSATVDEKLCMRAYTPTSSIDEVGIFDLLVKVYFKGVHPKFPDGGAMSQHLDSLPIGSVLDVKGPLGHIEYTGRGNFLVEGKPRFAKRLAMLAGGTGITPIYQVVQAIVKDPEDHTEMHVVYANRTEDDILLREELDEWAKKHDRLKVWYVVQESVREGWEYSVGFITETILREHVPPASPDTLALTCGPPPMIQFAVQPNLEKLGYDIHKDLLVF* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0835 880 PRINTS Eukaryotic molybdopterin domain signature 88 102 IPR008335 GO:0016491
Vra5g0835 880 PRINTS Eukaryotic molybdopterin domain signature 110 126 IPR008335 GO:0016491
Vra5g0835 880 PRINTS Eukaryotic molybdopterin domain signature 163 174 IPR008335 GO:0016491
Vra5g0835 880 PRINTS Eukaryotic molybdopterin domain signature 174 186 IPR008335 GO:0016491
Vra5g0835 880 PRINTS Eukaryotic molybdopterin domain signature 189 204 IPR008335 GO:0016491
Vra5g0835 880 PRINTS Eukaryotic molybdopterin domain signature 247 263 IPR008335 GO:0016491
Vra5g0835 880 PRINTS Eukaryotic molybdopterin domain signature 264 277 IPR008335 GO:0016491
Vra5g0835 880 PRINTS Eukaryotic molybdopterin domain signature 280 293 IPR008335 GO:0016491
Vra5g0835 880 PRINTS Eukaryotic molybdopterin domain signature 331 343 IPR008335 GO:0016491
Vra5g0835 880 PRINTS Eukaryotic molybdopterin domain signature 375 387 IPR008335 GO:0016491
Vra5g0835 880 PRINTS Eukaryotic molybdopterin domain signature 402 412 IPR008335 GO:0016491
Vra5g0835 880 PRINTS Eukaryotic molybdopterin domain signature 427 439 IPR008335 GO:0016491
Vra5g0835 880 PRINTS Eukaryotic molybdopterin domain signature 440 453 IPR008335 GO:0016491
Vra5g0835 880 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 624 736 IPR017927 GO:0016491
Vra5g0835 880 PANTHER NADH-CYTOCHROME B5 REDUCTASE 48 880 IPR001834 GO:0016491
Vra5g0835 880 Gene3D - 333 507 - -
Vra5g0835 880 Gene3D Translation factors 616 730 - -
Vra5g0835 880 SUPERFAMILY E set domains 333 459 IPR014756 -
Vra5g0835 880 Pfam Oxidoreductase molybdopterin binding domain 122 301 IPR000572 -
Vra5g0835 880 PRINTS Cytochrome B5 reductase signature 655 666 - -
Vra5g0835 880 PRINTS Cytochrome B5 reductase signature 676 683 - -
Vra5g0835 880 PRINTS Cytochrome B5 reductase signature 721 735 - -
Vra5g0835 880 PRINTS Cytochrome B5 reductase signature 754 773 - -
Vra5g0835 880 PRINTS Cytochrome B5 reductase signature 792 803 - -
Vra5g0835 880 PRINTS Cytochrome B5 reductase signature 848 856 - -
Vra5g0835 880 Gene3D - 72 323 IPR036374 -
Vra5g0835 880 Pfam Oxidoreductase FAD-binding domain 629 735 IPR008333 -
Vra5g0835 880 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 139 174 IPR022407 GO:0043546
Vra5g0835 880 PIRSF Nitr_rd_NADH 5 879 IPR012137 GO:0006809|GO:0042128|GO:0050464
Vra5g0835 880 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 548 558 IPR001709 GO:0016491
Vra5g0835 880 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 676 683 IPR001709 GO:0016491
Vra5g0835 880 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 708 717 IPR001709 GO:0016491
Vra5g0835 880 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 754 773 IPR001709 GO:0016491
Vra5g0835 880 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 780 789 IPR001709 GO:0016491
Vra5g0835 880 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 792 803 IPR001709 GO:0016491
Vra5g0835 880 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 824 840 IPR001709 GO:0016491
Vra5g0835 880 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 848 856 IPR001709 GO:0016491
Vra5g0835 880 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 512 593 IPR036400 -
Vra5g0835 880 SUPERFAMILY Riboflavin synthase domain-like 617 736 IPR017938 -
Vra5g0835 880 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 723 872 IPR039261 -
Vra5g0835 880 CDD eukary_NR_Moco 73 457 - -
Vra5g0835 880 Gene3D - 731 879 IPR039261 -
Vra5g0835 880 PANTHER NITRATE REDUCTASE 48 880 - -
Vra5g0835 880 Pfam Oxidoreductase NAD-binding domain 755 862 IPR001433 GO:0016491
Vra5g0835 880 Gene3D - 511 593 IPR036400 -
Vra5g0835 880 MobiDBLite consensus disorder prediction 21 51 - -
Vra5g0835 880 SMART Cyt_b5_2 517 589 IPR001199 -
Vra5g0835 880 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 545 552 IPR018506 GO:0020037
Vra5g0835 880 CDD cyt_b5_reduct_like 629 872 - -
Vra5g0835 880 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 71 331 IPR036374 -
Vra5g0835 880 Pfam Cytochrome b5-like Heme/Steroid binding domain 520 588 IPR001199 -
Vra5g0835 880 MobiDBLite consensus disorder prediction 591 610 - -
Vra5g0835 880 Pfam Mo-co oxidoreductase dimerisation domain 329 459 IPR005066 GO:0016491|GO:0030151
Vra5g0835 880 PRINTS Cytochrome B5 signature 539 549 IPR001199 -
Vra5g0835 880 PRINTS Cytochrome B5 signature 549 563 IPR001199 -
Vra5g0835 880 PRINTS Cytochrome B5 signature 564 571 IPR001199 -
Vra5g0835 880 PRINTS Cytochrome B5 signature 576 588 IPR001199 -
Vra5g0835 880 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 514 589 IPR001199 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0835 Vra-Chr5 14129567 14133195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0835 617 871 NADPH P450 reductases AT5G17770 36.965 3.25e-47 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0835 K10534 - gmx:732634 1506.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0835 5 14129567 14133195 Vra5g0835 5 14129567 14133195 ECH