Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0832 ATGCGCCAAGAAGTTGTACAGGAGGGCAGGAGCAAAACCCCAGAAGCGGAGAGAGAGATTTACAGGGTAAAAGCCGGGAACCGAAGAGTTACGCCGAGCCAGGAGGAATCGGAAGTAAGTAGCAGGAGGGTGGAGAAGCGGTTGCCCAGCGGTGACGTCTACATGGGGAGCTTCTCGGGCAACGCGCCTAGCGGATCGGGGAAGTATCTGTGGAGAGACGGGTGTATGTACGAGGGTGAGTGGAAGAAAGGGAAGGCGTGCGGGAAGGGGAAGTTTTCCTGGCCTTCGGGAGCCACCTACGAGGGTGAATTCAAATCGGGTCGGATGGAGGGGTTTGGGACCTTTACCGGATCCGAGGGCGAGACGTACTGCGGGTCGTGGAGTTCTGACCGGAAGCAAGGGTACGGGCAGAAGCGTTACGCCAACGGGGACTTCTACGAGGGGTTGTGGAAGCGGAACGTGCAGGAGGGGGAGGGGAGGTACGTGTGGGTAAACGGTAACGAGTACTACGGGGAGTGGAGGAACGGGGTGATTTGTGGGCGGGGTACGCTGATTTGGGCCAATGGGAATCGGTACGAGGGGCAGTGGGAGAACGGGGTTCCCAAGGGTCAAGGGGTTTTCACTTGGCCCGATGGGAGCTGCTATGTTGGGTGCTGGAACAAAGACCTTAAGGTGCACCAGCTTGATGGAACCTTTTACCCCGGGAGTGCTGATAATCTCACTGTCACTATGAGGAAGAGGTCTTCCGTTGACAGTTCCAGAGCAAGTGGGGTCAAGAGTTTTCCCCGGATTTGCATCTGGGAATCCGAGGGTGACGCGGGGGATATAACCTGTGATATCATCGATAATGTGTCCTTGTTATATCGGGATGGGAGAGAATCCGGGTCGGATCGGGGACTTGTTAAGCCGTTTCGACGGAATCCTTGTTGTTTTTCCGGTGAGGTGAAGAGACCTGGCCAGACTATATCAAAGGGGCATAAGAATTATGATCTTATGCTTAAACTGCAACTGGGTATAAGGTACTCTGTTGGTAAGGAAGCTTCCATTTCGCGAGGGCTCAAATCGACCGATTTTGAACCTAAGGAGAAGTTCTGGATTAGGTTTCCCTCTGAAGGATCTAAGATTACGCCACCGCACCAATCTGCGGAGTTCCGCTGGAAAGACTACTGCCCTATGGTTTTTAGACAATTGAGGAAGCTCTTTCAAGTGGACCCTGCGGATTACATGTTGGCCATATGTGGGAATGATGCCCTCAGGGAGCTTTCTTCTCCGGGGAAAAGTGGAAGCTTTTTCTACTTGACACAGGATGACAGGTTTATGATAAAGACGGTGAAGAAATCCGAAGTCAAGGTCCTTCTTCGGATGCTTCGAAGCTATTACCAACATGTTTCTAAATATGAGAACTCGCTTGTTACAAAGTTCTACGGAGTGCACTGTGTCAAGCCAATTGGAGGCCAAAAGACACGCTTTATTGTGATGGGCAATCTGTTCTGCTCGGAATATCCAATCCATAGACGATTTGACTTGAAAGGATCTTCCCATGGCCGCACAATAGACAAAACCAAGGAGGAAATTGATGAAACCACCACCCTTAAGGACCTCGATCTCAATTTTGTGTTTCGTCTACAAAAAAATTGGTTCCAGGATCTAATCGAACAAATTGAGCGGGACTGTGAGTTCTTGGAAGCTGAGGGAATTATGGATTACAGTCTCTTAGTGGGCATTCATTTTCGTGATGATAATACATATGAAAAAATGGGATTGTCACCGTTCCTTTTGCGCACAGGAAAGTGGGAGGATTCTTATCAGAGTGAAAAGTTCATGCGTGGTTATCGCTTTCTCGAAGCAGAGCTGCAAGATAGGGATTGGGTTAAATCTGGTCGGAGATCGTTGATTAGATTAGGAGCAAATATGCCAGTGAGAGCAGAGCGTATGGCTCGGAGGAGTGATTTTGATCAATACACCCCTTGTTGCAGTGGTGAAACTTACGACGTTGTTTTATATTTTGGGATTATTGACATTCTGCAAGGTTATGATATCAGCAAGAAACTGGAGCATGCTTACAAGTCTTTACAGGTTGACCCGTCATCAATCTCAGCCGTTGATCCAAAGCTCTACTCAAAAAGGTTCCGGGATTTTGTGGGCAGAATATTCATTGAAGACCGGTGA 2169 0.4915 MRQEVVQEGRSKTPEAEREIYRVKAGNRRVTPSQEESEVSSRRVEKRLPSGDVYMGSFSGNAPSGSGKYLWRDGCMYEGEWKKGKACGKGKFSWPSGATYEGEFKSGRMEGFGTFTGSEGETYCGSWSSDRKQGYGQKRYANGDFYEGLWKRNVQEGEGRYVWVNGNEYYGEWRNGVICGRGTLIWANGNRYEGQWENGVPKGQGVFTWPDGSCYVGCWNKDLKVHQLDGTFYPGSADNLTVTMRKRSSVDSSRASGVKSFPRICIWESEGDAGDITCDIIDNVSLLYRDGRESGSDRGLVKPFRRNPCCFSGEVKRPGQTISKGHKNYDLMLKLQLGIRYSVGKEASISRGLKSTDFEPKEKFWIRFPSEGSKITPPHQSAEFRWKDYCPMVFRQLRKLFQVDPADYMLAICGNDALRELSSPGKSGSFFYLTQDDRFMIKTVKKSEVKVLLRMLRSYYQHVSKYENSLVTKFYGVHCVKPIGGQKTRFIVMGNLFCSEYPIHRRFDLKGSSHGRTIDKTKEEIDETTTLKDLDLNFVFRLQKNWFQDLIEQIERDCEFLEAEGIMDYSLLVGIHFRDDNTYEKMGLSPFLLRTGKWEDSYQSEKFMRGYRFLEAELQDRDWVKSGRRSLIRLGANMPVRAERMARRSDFDQYTPCCSGETYDVVLYFGIIDILQGYDISKKLEHAYKSLQVDPSSISAVDPKLYSKRFRDFVGRIFIEDR* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0832 722 Pfam MORN repeat 100 120 IPR003409 -
Vra5g0832 722 Pfam MORN repeat 169 191 IPR003409 -
Vra5g0832 722 Pfam MORN repeat 192 213 IPR003409 -
Vra5g0832 722 Pfam MORN repeat 146 167 IPR003409 -
Vra5g0832 722 Pfam MORN repeat 77 98 IPR003409 -
Vra5g0832 722 Pfam MORN repeat 123 144 IPR003409 -
Vra5g0832 722 Pfam MORN repeat 54 76 IPR003409 -
Vra5g0832 722 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 413 716 IPR002498 GO:0016307|GO:0046488
Vra5g0832 722 Coils Coil 544 564 - -
Vra5g0832 722 Gene3D - 125 174 - -
Vra5g0832 722 Gene3D - 44 111 - -
Vra5g0832 722 CDD PIPKc_AtPIP5K_like 328 717 - -
Vra5g0832 722 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 37 721 IPR023610 -
Vra5g0832 722 SUPERFAMILY SAICAR synthase-like 324 718 - -
Vra5g0832 722 MobiDBLite consensus disorder prediction 1 46 - -
Vra5g0832 722 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 314 495 IPR027484 -
Vra5g0832 722 PANTHER PHOSPHATIDYLINOSITOL 4-PHOSPHATE 5-KINASE 37 721 - -
Vra5g0832 722 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 49 176 - -
Vra5g0832 722 SMART PIPK_2 354 719 IPR002498 GO:0016307|GO:0046488
Vra5g0832 722 Gene3D - 175 256 - -
Vra5g0832 722 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 323 718 IPR002498 GO:0016307|GO:0046488
Vra5g0832 722 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 164 229 - -
Vra5g0832 722 PIRSF PIP5K_plant 235 722 IPR017163 GO:0005524|GO:0016308
Vra5g0832 722 PIRSF PIP5K_plant 2 243 IPR017163 GO:0005524|GO:0016308
Vra5g0832 722 Gene3D - 496 718 - -
Vra5g0832 722 SMART morn 167 188 IPR003409 -
Vra5g0832 722 SMART morn 121 142 IPR003409 -
Vra5g0832 722 SMART morn 144 165 IPR003409 -
Vra5g0832 722 SMART morn 52 73 IPR003409 -
Vra5g0832 722 SMART morn 98 119 IPR003409 -
Vra5g0832 722 SMART morn 190 211 IPR003409 -
Vra5g0832 722 SMART morn 75 96 IPR003409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0832 Vra-Chr5 14093886 14097639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0832 27 721 Acyl Lipid Metabolism Gene Families AT1G77740 74.326 0.0 1071
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0832 K00889 - gmx:100813118 1297.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0832 5 14093886 14097639 Vra5g0832 5 14093886 14097639 ECH
Vra5g0832 5 14093886 14097639 Vra6g1376 6 27103801 27105380 PCT