Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0829 ATGGAGAATCTGCAAATTGCTCTTAAAGATTATAGCTTATCAGTTTCCACCGTCCCAGAAAAGGGTCGTTCTCTCTTCGCTTCAAGGGATTTCTATCCAGGGGATGTGATTATAGGCCAAGAACCTTACATTTGTGTTCCAAAAAACTCCTCACTTTCCACCCCTAAAAGGTGTGATGGATGTTTCATTACATCTAATGTCCTTAGAAGGTGCTCACGTTGCCATGTTGCATACTATTGCGGAACCACATGTCAGAGGTCAGAGTGGGAGCTGCATCGTCTTGAGTGTGAGGTCCTCTCAAGGCTTGACATGGATAAGAGAAAATCTGTCACGCCATCCATACGGCTGATGGTGAGACTTTATCTACGGAGGAAGTTGCAAGATGATAAGGTTATCCCAAGCACTGCTATGGACAACTACAACTTGGTGGAGGCATTAGTGGCTCACATGTCCGATATCACAGAGGAGCAGCTGGTGCTTTATGCACAGATGGCTAATCTTGTATATTCTATATTGCAATGGCCGGAAATCAATATAAAAGAGATTGCAGAAAATTTTTCTAAGTTTGCATGTAATGCTCATACTATTTGTGACAGTGAGTTAAGACCTGTGGGAACAGGATTGTATCCCGTAATTTCCATAATCAATCATAGTTGTTTGCCCAATTCTGTGTTGGTTTTTGAGGGAAGGTCAGCATTGGTACGTGCTGTGCAACATATACCCGCAGGTATTGAGGTAGTGATAAGTTATATAGAGACTGCTGGAAGCACAATAACCCGACAGAAGGCTCTCAAAGAGCAGTATTTATTCACTTGTACATGTCCCCGCTGTTCTAAAATGGGCCAGAAAGATGATATACAAGAAAGTGCAATTTTAGAAGGATATAGATGCAAAAATGAAAAATGTGGTGGTTTATTGCTTCGAACAACCGATGGGAAAGGATTTCAATGCCAAGGTTGCCAACTAGTTATGGGCAAGGAGGAGATAAAGGAAATTATAACTGAAATTGAATTGCTATCTGAAGAAGCAGCTTCTAAGTCTTCTTTCTCTTGCAGTTATCAAGAAGTTATTTCCATTTACAAAAAGACTGAGAAACTGCAAACAAAGCTCTATCATCCTTTCTCAATTAGTTTGATGCAAACTCGAGAGAAGATTTTGAAGTCATTAATGGAGCTGGAACACTGGACTGAAGCTTTAGCATATTGCAAATTGACCATTCCATTCTATGAAAAAGTGTATCCATCTGTTCACCCTCTGCTTGGATTGCAATATTATACTTGTGGAAAACTAGAATGGTATTTGGGAGAGGCAGAGGAAGCTGTTAAATCACTGACCAAGGCGGTGGATATACTACGGATTACTCATGGCACAAATACACCTTTCATGAAGGACCTTTTGATGAAGTTGGAAGAAGCCCGTGCTGAAGCCTCTTACAAATGGTCCTCCATACACTGCTAG 1458 0.4095 MENLQIALKDYSLSVSTVPEKGRSLFASRDFYPGDVIIGQEPYICVPKNSSLSTPKRCDGCFITSNVLRRCSRCHVAYYCGTTCQRSEWELHRLECEVLSRLDMDKRKSVTPSIRLMVRLYLRRKLQDDKVIPSTAMDNYNLVEALVAHMSDITEEQLVLYAQMANLVYSILQWPEINIKEIAENFSKFACNAHTICDSELRPVGTGLYPVISIINHSCLPNSVLVFEGRSALVRAVQHIPAGIEVVISYIETAGSTITRQKALKEQYLFTCTCPRCSKMGQKDDIQESAILEGYRCKNEKCGGLLLRTTDGKGFQCQGCQLVMGKEEIKEIITEIELLSEEAASKSSFSCSYQEVISIYKKTEKLQTKLYHPFSISLMQTREKILKSLMELEHWTEALAYCKLTIPFYEKVYPSVHPLLGLQYYTCGKLEWYLGEAEEAVKSLTKAVDILRITHGTNTPFMKDLLMKLEEARAEASYKWSSIHC* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0829 485 SMART set_7 11 257 IPR001214 GO:0005515
Vra5g0829 485 ProSiteProfiles SET domain profile. 11 251 IPR001214 GO:0005515
Vra5g0829 485 Gene3D - 57 108 - -
Vra5g0829 485 Gene3D - 109 193 - -
Vra5g0829 485 ProSitePatterns Zinc finger MYND-type signature. 58 96 IPR002893 -
Vra5g0829 485 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 1 476 - -
Vra5g0829 485 Gene3D Tetratricopeptide repeat domain 405 484 IPR011990 GO:0005515
Vra5g0829 485 Gene3D SET domain 24 277 IPR046341 -
Vra5g0829 485 Pfam MYND finger 58 96 IPR002893 -
Vra5g0829 485 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR1 1 476 - -
Vra5g0829 485 ProSiteProfiles Zinc finger MYND-type profile. 58 96 IPR002893 -
Vra5g0829 485 Pfam SET domain 22 250 IPR001214 GO:0005515
Vra5g0829 485 SUPERFAMILY TPR-like 380 450 IPR011990 GO:0005515
Vra5g0829 485 SUPERFAMILY SET domain 12 250 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vra5g0829 SET 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0829 K11426 - gmx:100789518 794.267