Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0828 ATGGATGGGAAGCCTAACCCGGATTCCTCCTCCCCGGACTTCCTCCGCCACGTTCAAGCCGCCTTGAAACGACACCGTCCACTCGGTTCAATGCAGTCCAATAGCATAAGGCCAAGGCGCACGCTACTTCCACAACGAAAGCTATCCAACACTCCCTCCGACCCCACCAATTCTCAAGAACAAGCTTCTTCCAAGGTCTCACTCAACACCCTCGTCCCTTCCCAAAACCTACACGTTCAGAAGAAAGATCAATTTTCAGTTCACACGAATTCTACTGCGCAGGATGCTAAGGCCACCACTGAGTTGGAGAATTTATCGTCTCACATGGGTTCGCTTGGATTCGCAGAAATGGAGTGGGTTGAAGGCAACCAAATTGAAGCATCGTCATCGTCATCATTGCTAGGAGGCAACCAGAAGGGGGATGTTCAGCAGGCTGGCTTTGACGCGAGTTTGAGATGTGACAGTGGAGTGAGTTCCATGTTGCCAAAGAGAAGTGTGGTTACTCAGGATCATTTGCAGCAATTCAGTAGCTTTTTGAGTCAGCCAGCTACCCAGTCTTCGGTTTTGGGACCTTCATGTGCTACAACAACCTCAGTTCATTCAACTTCGGCACCTATGCTAAATTCAACAACACGATATTCTCATTCGCATCTAGACGGTGGCTCAAATGTGACTGCTGAGCCTTTTGGGGAGGTTAATGCTAATCCTCGTCCTGTAACTGAAGGGGTTGTGAAATCAGTAAATGTTTTCCAAAAGGAAACCAACAGAATGTTGATGGATCGGGGAGCAGAAGCTGAAGTGCCGGCCTCTGATCTTGGTATTGGTGATGCAGAATTGGTGTCTAAGGAGAGCAATCGATCTAGGGAGCAACAAGGGGGGATTTTGAAAGAATCTGGAAATTCTAAATATACTTGGGATGATGGTAAAGGGAAAGAGGCTGTGGATGTTGCCACTACACAACCGCAGGTACTACCTCCCACATTCACAACCACATCTTCAGATGTGAAGTTGGAGTCTTCTAAGGTAGAAAAGCGAGAGAAGATTGCAAGTAGTAAAGGTGCATCAGCTCCCCGTAAGAGGACTTATGACCCTGATTTGTTTTTTAAAGTTAATGGAAAGCTTTACCAACGTCTTGGGAAGATAGGTAGTGGTGGAAGCAGTGAGGTACACAAAGTGATTTCATCGGACTGTAGGATATATGCCCTTAAAAAGATCAAGCTCAAGGGTCGTGATTATGCTACTGCATTTGGGTTTTGTCAAGAGATTGAGTATCTCAATAGGCTGAAGGGAAAGGATAACATCATACAGCTCATAGATTATGAGGTGACAGACAAGGCATTACTTGAGGAAGTTATGAAAGGCTCTTTAAGTAATAGAGATGGCCGGGTCAAGGATGATGGATGTATATACATGGTCCTTGAATATGGAGAAATTGATTTGGCTCACATGTTGTCTCAGAAGTGGAAGGAACTGGATGGGAGCCACCGGACCATAGATGAGAACTGGCTTCGATTTTATTGGCAGCAAATTCTTCTAGCTGTCAACACTATTCACGAGGAACGTATTGTGCACTCAGACTTGAAGCCAGCTAACTTCCTTCTTGTCAAAGGTTCCCTAAAACTAATTGATTTTGGTATAGCCAAAGCAATAATGAATGACACAACCAACATCCAACGGGATTCACAGGTGGGTACACTTAGTTACATGTCTCCAGAGGCATTTATGTGTAATGAGACTGATGCGAATGGAAACATCATAAAGTGTGGCCGGTCATCAGATATATGGTCCCTGGGTTGCATCCTTTATCAAATGGTATATGGGAGAACGCCTTTTTCTGATTACAAGACATTTTGGGCCAAATTCAAGGTCATAACAGATCCACATCATGAAATTACGTATGAACCAGTTTCAAACCCATGGCTTTTGGATCTTATGATGAGGTGTTTAACATGGGACCGCAATCAAAGGTGGAGAATACCTCAGCTACTGGAACATCCTTTTCTTGTTCCTCCTGTACCATCTCATCCATCTTTGCCCCAAGATAATAATAGCTGTAAATTGCTACAACATATTTCTGAAACTTGTACATATGACCCAGAGGTATCTGAACTGTGTAGTCAGCTCCAACGGCTTCTAAGTGATTCAGTCGACAAAACAACTCACTCACTAAATTCACGAGATCAACAAATAAAACTGCTGTCCCAAATGTCAGATATGTGTATTCAGCTGCATGAACGTTTGAGAAATACTGGAAACAAGTAG 2262 0.4408 MDGKPNPDSSSPDFLRHVQAALKRHRPLGSMQSNSIRPRRTLLPQRKLSNTPSDPTNSQEQASSKVSLNTLVPSQNLHVQKKDQFSVHTNSTAQDAKATTELENLSSHMGSLGFAEMEWVEGNQIEASSSSSLLGGNQKGDVQQAGFDASLRCDSGVSSMLPKRSVVTQDHLQQFSSFLSQPATQSSVLGPSCATTTSVHSTSAPMLNSTTRYSHSHLDGGSNVTAEPFGEVNANPRPVTEGVVKSVNVFQKETNRMLMDRGAEAEVPASDLGIGDAELVSKESNRSREQQGGILKESGNSKYTWDDGKGKEAVDVATTQPQVLPPTFTTTSSDVKLESSKVEKREKIASSKGASAPRKRTYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCRIYALKKIKLKGRDYATAFGFCQEIEYLNRLKGKDNIIQLIDYEVTDKALLEEVMKGSLSNRDGRVKDDGCIYMVLEYGEIDLAHMLSQKWKELDGSHRTIDENWLRFYWQQILLAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMNDTTNIQRDSQVGTLSYMSPEAFMCNETDANGNIIKCGRSSDIWSLGCILYQMVYGRTPFSDYKTFWAKFKVITDPHHEITYEPVSNPWLLDLMMRCLTWDRNQRWRIPQLLEHPFLVPPVPSHPSLPQDNNSCKLLQHISETCTYDPEVSELCSQLQRLLSDSVDKTTHSLNSRDQQIKLLSQMSDMCIQLHERLRNTGNK* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0828 753 ProSiteProfiles Protein kinase domain profile. 375 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0828 753 SMART serkin_6 375 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0828 753 PANTHER MIXED LINEAGE PROTEIN KINASE 6 724 - -
Vra5g0828 753 MobiDBLite consensus disorder prediction 280 308 - -
Vra5g0828 753 MobiDBLite consensus disorder prediction 28 66 - -
Vra5g0828 753 CDD PKc_Mps1 373 668 - -
Vra5g0828 753 ProSitePatterns Serine/Threonine protein kinases active-site signature. 522 534 IPR008271 GO:0004672|GO:0006468
Vra5g0828 753 MobiDBLite consensus disorder prediction 323 359 - -
Vra5g0828 753 ProSitePatterns Protein kinases ATP-binding region signature. 381 403 IPR017441 GO:0005524
Vra5g0828 753 MobiDBLite consensus disorder prediction 337 359 - -
Vra5g0828 753 Gene3D Phosphorylase Kinase; domain 1 368 455 - -
Vra5g0828 753 PANTHER DUAL SPECIFICITY PROTEIN KINASE TTK 6 724 IPR027084 GO:0004712|GO:0007093|GO:0051304
Vra5g0828 753 Pfam Protein kinase domain 375 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g0828 753 SUPERFAMILY Protein kinase-like (PK-like) 369 678 IPR011009 -
Vra5g0828 753 MobiDBLite consensus disorder prediction 23 66 - -
Vra5g0828 753 MobiDBLite consensus disorder prediction 195 221 - -
Vra5g0828 753 Gene3D Transferase(Phosphotransferase) domain 1 489 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0828 Vra-Chr5 14010925 14014524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0828 381 669 MAP Kinase Kinase Kinase AT4G08470 28.571 6.76e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Vra5g0828 Pkinase 3.3e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0828 K08866 - gmx:100788990 1228.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0828 5 14010925 14014524 Vra5g0828 5 14010925 14014524 ECH