Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0822 ATGGCCGAAACTCGGAGATCCACGGGCACCGTTAAGTGGTTCAACGCGCAGAAGGGTTTCGGATTCATAACTCCCCAGGACGGCTCCGAAGATCTCTTCGTTCACTTCACTTCCATCCGATCCGACGGCTACCGCTCCTTGACCGAGGGCCAGTCTGTCGAGTTCCTACTCGATTACGGCGACGACGGCCGTGCCATGGCCGTCGACGTCACCTCCGCCGTTAGATCTCGCCGTCCAGGAGGTTTTCGCGGTGGGACCGGGAGAGGAAGAGGACGCTACGGCGGAGGGGAAGGCCGTGGTGGAGGGATCGGCCGGAGAGGGGCAGGAGGTTACGGCGGTGGAGGAGGAGGACCTGAGTGTTATAATTGTGGAAGAATAGGTCACTTGGCTAGGGATTGTTACCACGGACAGGGTGGTGGTGGTGGTGGTGGTGCAGGTGGTGATGGTAGGATACGGAGACGCGGTGGAGGAGGAGGCGGCGGCGGTGGTGGAGGAGGGTGTTATAACTGCGGGGAGGAAGGGCATTTTGCAAGGGAATGTCCGAACGTTGGGAAATTAAATGAGTGA 567 0.5961 MAETRRSTGTVKWFNAQKGFGFITPQDGSEDLFVHFTSIRSDGYRSLTEGQSVEFLLDYGDDGRAMAVDVTSAVRSRRPGGFRGGTGRGRGRYGGGEGRGGGIGRRGAGGYGGGGGGPECYNCGRIGHLARDCYHGQGGGGGGGAGGDGRIRRRGGGGGGGGGGGGCYNCGEEGHFARECPNVGKLNE* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0822 188 Gene3D - 1 71 IPR012340 -
Vra5g0822 188 ProSiteProfiles Zinc finger CCHC-type profile. 167 182 IPR001878 GO:0003676|GO:0008270
Vra5g0822 188 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Vra5g0822 188 SMART c2hcfinal6 166 182 IPR001878 GO:0003676|GO:0008270
Vra5g0822 188 SMART c2hcfinal6 119 135 IPR001878 GO:0003676|GO:0008270
Vra5g0822 188 Pfam 'Cold-shock' DNA-binding domain 8 71 IPR002059 GO:0003676
Vra5g0822 188 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Vra5g0822 188 Pfam Zinc knuckle 166 182 IPR001878 GO:0003676|GO:0008270
Vra5g0822 188 Pfam Zinc knuckle 119 133 IPR001878 GO:0003676|GO:0008270
Vra5g0822 188 Gene3D - 163 186 - -
Vra5g0822 188 SMART csp_8 8 73 IPR011129 GO:0003676
Vra5g0822 188 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 183 - -
Vra5g0822 188 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Vra5g0822 188 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Vra5g0822 188 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Vra5g0822 188 ProSiteProfiles Zinc finger CCHC-type profile. 120 133 IPR001878 GO:0003676|GO:0008270
Vra5g0822 188 SUPERFAMILY Nucleic acid-binding proteins 5 71 IPR012340 -
Vra5g0822 188 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Vra5g0822 188 MobiDBLite consensus disorder prediction 77 105 - -
Vra5g0822 188 Gene3D - 96 144 - -
Vra5g0822 188 SUPERFAMILY Retrovirus zinc finger-like domains 152 185 IPR036875 GO:0003676|GO:0008270
Vra5g0822 188 SUPERFAMILY Retrovirus zinc finger-like domains 105 137 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0822 Vra-Chr5 13948870 13950080 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Vra5g0822 CSD 4.1e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0822 - - gmx:100815773 211.075