Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0816 ATGGAAATAGACACGAACACAGACATCGATGCAATCCACAACCTCCACTTCTCCGGATACACTACCATCACCGACACCAACCCTTCTTCCGACGACGACTACGGTTGCAACTGGAACCACTGGTCCCCCCTCGTCAACTGGGACGCCTTCACCGGATCCCACGATGACTTCCACCACCTCATAGACTCTATCGTCTCCGACCCTCCCACCGAGTACCCCAGCCCCGAAGACCACGCCGCCAGCAACTCCCCCTCCGCCTCCATAACGGAGGAAGATGACGCCGAGGAAGAAACAGCTGCCGCCGACGATTCCAAGGGCCTAAGACTGGTCCATCTGCTCATGGCCGCCGCGGAGGCCCTCACCGGCGCCACCAAGAGTCGCGACCTGGCTCGAGTGATATTGGTTCGGCTCAAGGATTTGGTGTCCCACTCCTCGCACGGCTCCAACATGGAGAGGCTCGCCGCCTACTTCACCGACGCACTCCAGGGCCTGCTAGAAGGCGCCGGGGGTGCGCATAATAACAGCAAACATCATTACTACATCACTTGTGGGTCCCACCACCCCCGGGACGATCATCATCATCAAAACGACACCCTAGCGGCGTTCCAACTGCTTCAGGACATGTCTCCCTACGTCAAGTTCGGACACTTCACCGCCAACCAGGCCATCCTCGAGGCCGTGGCCCACGAGCGCCGAGTCCACATCGTGGACTACGACATCATGGAAGGGGTCCAGTGGGCTTCTCTCATGCAGGCCCTTGCCTCCGACAAAACAGGTCCACCGGGCCCACACCTTCGAATCACAGCATTGTCCAGAACCGGCACCGGACGCCGCTCCATCGCCAGCGTTCAGGAGACCGGGAGGCGGTTGACGGCGTTCGCCGCATCCCTTGGGCAGCCGTTCACGTTCCACCAGTGCAGGTTGGATCCCGACGAAACGTTTAAACCTTCGTCTCTGAAGCTGGTTCGCGGAGAGGCTTTGGTTTTTAACTGTATGTTAAACTTGCCGCACCTGAGTTATCGCGCACCCGATTCGATTGCGTCGTTTTTGAGTGGAGCGAAAGAGTTGAAGCCGAGGCTGGTGACTTTGGTGGAGGAAGAGGTGGGGTCCAGTGTGGGAGGGTTCGTGGGAAGGTTCATGGACTCGCTGCATCACTACTCGGCGGTGTTTGACTCGCTGGAGGCTGGGTTTCCGATGCAGGGGCGGGCCAGGGCCCTTGTAGAGCGGATTTTCTTAGGCCCAAGGATAGTGGGCTCGCTGGCCCGGATATATCGGACGGGTGAAGAGCTGGAGGAGAGAAGGTCATGGGGGGAGTGGTTGGGTGCGGCAGGGTTCAGGGGAGTCCCGATGAGCTTCGCCAATCATTGCCAAGCGAAGCTTCTACTGGGTCTTTTCAACGACGGATATCGGGTGGAGGAGTTAGGGACTAATAAGTTGGTGTTGGATTGGAAATCTCGGCGCTTGCTTTCTGCCTCCCTTTGGACTTCTTCTTCTTCCTCAGACTCCCATTAA 1512 0.582 MEIDTNTDIDAIHNLHFSGYTTITDTNPSSDDDYGCNWNHWSPLVNWDAFTGSHDDFHHLIDSIVSDPPTEYPSPEDHAASNSPSASITEEDDAEEETAAADDSKGLRLVHLLMAAAEALTGATKSRDLARVILVRLKDLVSHSSHGSNMERLAAYFTDALQGLLEGAGGAHNNSKHHYYITCGSHHPRDDHHHQNDTLAAFQLLQDMSPYVKFGHFTANQAILEAVAHERRVHIVDYDIMEGVQWASLMQALASDKTGPPGPHLRITALSRTGTGRRSIASVQETGRRLTAFAASLGQPFTFHQCRLDPDETFKPSSLKLVRGEALVFNCMLNLPHLSYRAPDSIASFLSGAKELKPRLVTLVEEEVGSSVGGFVGRFMDSLHHYSAVFDSLEAGFPMQGRARALVERIFLGPRIVGSLARIYRTGEELEERRSWGEWLGAAGFRGVPMSFANHCQAKLLLGLFNDGYRVEELGTNKLVLDWKSRRLLSASLWTSSSSSDSH* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0816 503 Pfam GRAS domain family 109 495 IPR005202 -
Vra5g0816 503 MobiDBLite consensus disorder prediction 66 102 - -
Vra5g0816 503 PANTHER SCARECROW-LIKE PROTEIN 26 18 496 IPR030028 -
Vra5g0816 503 ProSiteProfiles GRAS family profile. 100 495 IPR005202 -
Vra5g0816 503 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 18 496 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0816 Vra-Chr5 13873211 13875424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0816 77 496 GRAS Transcription Factor Family AT5G41920 36.512 4.33e-56 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra5g0816 GRAS 6.4e-101 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0816 - - gmx:100787926 796.964