Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0810 ATGTCGTTGAGTCCTCCGAGAGAGAGAAACAACGTCAATGGCAGAAGGCGAGAGAGGCCAACGTTCCAGATGTACTGGTGCTTCCAGTGCAACCGCATGGTCCGCGTCGCAGTGGATAACAATAACCCCTCAGAGGTCACGTGTCCGCGCTGCTTCGGCCAATTCATATGCGAAGTAAACGTGCCGCGCCCAAGACTCGTTGTCGATTTCACTACCCCAGACCCCTCCCCAGAAGCGCGTTTGCTCGAAGCGCTTTCCCTCATGATGGACCCACCCATACGCCGCTTCCCGGCTCTCCTCCAACCCGAACCCGAAGAGGTCCCGGTTCATCACAACCGCCGCCGTCGCTTACGCCGCCGCCAACCCGAACCCGAACCCGTCCCTGAACCCCCACAACCCCGCCCGCGCACGTGGATCGTATTCCAGCCCATGGACTCACCCAACCCCTTCCTGCCCATTAACAACATTGCTAACCGCCCCGGCCCAGGCCCACTCCCATTCGCGCTCCCGCGCACCGTGGACACTCGCGACTATTTCTTGGGACCTGGACTCAACGAACTCATCGAACAGATAACCGAAAACGACAGACAGGGTCCGGCGCCGGCGCCGGAGAGGGCCATTGAATCGATTCCGACGGTGAAAATTGCGAGCGCGCATCTGAAGGAGAATTCTCAGTGTCCAGTTTGTCAGGAGGAATTTGAAGTTGGCGGAGAAGCGAGGGAACTTGCGTGCAAACACATATATCACTCGGATTGCATTGTTCCGTGGCTGAGGCTTCACAATTCTTGTCCAGTGTGCCGTCACGAGGTTTCTGTGCCTCCTTCTTCTTCGTCGGAGGATGAGTGTGTTGATGTAAGCGGAGATGAAGGATATTTTGCATCTGACAGTCCGACGCTCTCTGGAGCTAGGAGGCAACCCTCTTGCTGCATTCTTTAA 936 0.5694 MSLSPPRERNNVNGRRRERPTFQMYWCFQCNRMVRVAVDNNNPSEVTCPRCFGQFICEVNVPRPRLVVDFTTPDPSPEARLLEALSLMMDPPIRRFPALLQPEPEEVPVHHNRRRRLRRRQPEPEPVPEPPQPRPRTWIVFQPMDSPNPFLPINNIANRPGPGPLPFALPRTVDTRDYFLGPGLNELIEQITENDRQGPAPAPERAIESIPTVKIASAHLKENSQCPVCQEEFEVGGEARELACKHIYHSDCIVPWLRLHNSCPVCRHEVSVPPSSSSEDECVDVSGDEGYFASDSPTLSGARRQPSCCIL* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0810 311 Pfam zinc-ribbon 23 58 IPR039525 GO:0061630
Vra5g0810 311 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 14 288 - -
Vra5g0810 311 Pfam Ring finger domain 225 267 IPR001841 -
Vra5g0810 311 SUPERFAMILY RING/U-box 206 274 - -
Vra5g0810 311 SMART ring_2 226 266 IPR001841 -
Vra5g0810 311 CDD RING-H2_RNF126_like 225 267 - -
Vra5g0810 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 273 IPR013083 -
Vra5g0810 311 ProSiteProfiles Zinc finger RING-type profile. 226 267 IPR001841 -
Vra5g0810 311 MobiDBLite consensus disorder prediction 100 136 - -
Vra5g0810 311 PANTHER - 14 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0810 Vra-Chr5 13764165 13767575 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0810 198 281 C3H Transcription Factor Family AT1G68180 52.381 1.45e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0810 K11982 - gmx:100787399 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0810 5 13764165 13767575 Vra5g0810 5 13764165 13767575 ECH