Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0806 ATGGTTAAGTCAGAGCACAAGATCAAAACAGAACCATCATCAAAGGCAATGCGGTCTATATCCTCGTTATCAGCATCATCACCAGCACCAGCACCAGATAGCAAGAAGAAGAAGTACAAGGGAGTGAGAATGAGGAGCTGGGGGTCTTGGGTTTCAGAGATCAGAGCACCAAACCAGAAAACAAGAATATGGTTAGGCTCTTATTCAACCCCAGAGGCTGCAGCTAGAGCCTATGATGCTGCACTTCTGTGCCTCAAAGGCTCCTCTGCTAATTTTAATTTCCCTTTAAGCTCTTCACAATATATTCCTGGAGATGCTGTCATGTCCCCCAAATCAATCCAAAGAGTTGCTGCAGCTGCTGCAAATAGTTTCATTGACAATGCCACCATTCCCCCATCTGCATCTCCAGCTTCAACCTCATCATCATCGTTGGTCTCATCCCCCTCCACGGCCTATTCTCCTTCGGATCAAGTCGATGATGATGCCTCACTGATATCGTCTCTGGAAACCTACACCAGTTATGATCAAGCAAATGAATCAATGGCTATGAATGAGATGGAACCTTGGTACACTTTAGATGATCTTCGATCCCCCAAGTATGTTGATCAGATGTTAAGTGGCGCTTTCTTTGATGTTGATTCGTCCCATCTGCTCGATGATCTATACGAAGAAAGCGACATCCGTTTGTGGAACTTCTGCTGA 702 0.453 MVKSEHKIKTEPSSKAMRSISSLSASSPAPAPDSKKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSANFNFPLSSSQYIPGDAVMSPKSIQRVAAAAANSFIDNATIPPSASPASTSSSSLVSSPSTAYSPSDQVDDDASLISSLETYTSYDQANESMAMNEMEPWYTLDDLRSPKYVDQMLSGAFFDVDSSHLLDDLYEESDIRLWNFC* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0806 233 MobiDBLite consensus disorder prediction 14 29 - -
Vra5g0806 233 MobiDBLite consensus disorder prediction 1 40 - -
Vra5g0806 233 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 233 - -
Vra5g0806 233 CDD AP2 37 97 IPR001471 GO:0003700|GO:0006355
Vra5g0806 233 MobiDBLite consensus disorder prediction 132 158 - -
Vra5g0806 233 Gene3D AP2/ERF domain 37 97 IPR036955 GO:0003700|GO:0006355
Vra5g0806 233 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Vra5g0806 233 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Vra5g0806 233 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Vra5g0806 233 SUPERFAMILY DNA-binding domain 38 97 IPR016177 GO:0003677
Vra5g0806 233 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 9 233 - -
Vra5g0806 233 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Vra5g0806 233 Pfam AP2 domain 38 87 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0806 Vra-Chr5 13724707 13726660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0806 1 232 AP2-EREBP Transcription Factor Family AT1G21910 45.600 9.68e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra5g0806 AP2 3.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0806 - - pvu:PHAVU_009G123300g 351.288