Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0794 ATGGAGTCCACCGTCATGGACTGCAGTCCTTCCTCCAGTGCCGCCCCGCCCCGCCGCAGTGGTCGCCGGAAGCTGGTTCAATCGACGCTCTTCCCTCTCAAGCCACCGGAGCCCGTTGAGAAGAAGGACAAAGAGGACGAACTCGACGAGGATTACTCTGAGGCTAAGAATAACAAGAAGAGGAAGAGGTCCAAGGCAAAAGCCACTCCTCCGATCGACGAGGATTACTCTGAGGCTGAGAATAACAAGAAGAGGAAGATGTCCAAGGCAAAAGCCACTCCTCCGAAAAAAGGTTCTTCTAAGCGTCCCACGCCAAAGAAAAAAGCAACGGCTAATGGCACTAACGGGTCAACTTCGAAGCAGGTGTTGGCTAATTCCGATCAGGTTAAGGCACCTGTGTTTGATTTGTTTCTAGAGGCAAAATTGGCTGCTGAGGAAGATTCGAGGATATATGCAGGACGTCAGGTACATCCGTTTTTTTCATTATGGAAGGAGGGAAAAAAAGTTCATGATGTGAATGAATCCGGAAGTAATTTACCAACAACTAAGAGTAAGCATAAAAGGACAACTTGCGGCCCTATTCATGTATTTGAAAATGTTAAGGATGATACGTCATCAGTTGACTGGAGAAACTGGACTTTTATGGAAAATATCACCTCTATGAACTATGGTCAAGGGAGTGTAAATTCATCTGTTTTAGAGGGTTCTGTTGAATCCTTAAATTTTGATAAGCTTCACAGTTTTTTGAATCCATCAGGCATTTCAATTTCTCAGAATGCCTTATCACCATCAAACCCATCTTCACTAGCAGAACAATCAGCATGTCTGACGTGTGGAAATGCTGAACTGGACACGGAGGTGGATGAATCTGTTACTCCAACTGTGCAAGCTGGCATTTTTAGAAAGTCTAAAGATACCGAACCACTGAATAGATTTCTTCAAGAAAGTATGAGATCATACTACCGTAGCTGTTTAGATTTGGAGGAGTGCCATTTATGGACATACAAATATAAGCCAACGAAGGCTGTTGAGGTATGCGGGAATGATGAATCTGTTAATTTCTTGAGTGACTGGCTACATCGTTGGCATGAAAGGCAATATAAAAGCAGGAAGGATAATACTGACACTGATAAAAGTGGCATGCAAGATGTTGAAGATGACGATGATGATTACAAATGTTCTTATAGTGACTGTGATTCAGAAGATATGAATGAGAAGAATTCCCTGAAAAATGTTCTTTTAATTACAGGACCAATTGGGAGTGGCAAGTCTTCAGCAGTCCATGCTTGTGCCAAAGAGCAAGGGTTTGTTATTTTAGAGTTCAATTCATCACATTCTACAAATGGGACTGCTATCAGGAACTTGGAACATTCTCTTAATTCACTTGGGTTCAAAAGCCAATCAGGAAGCACTGCAAGTTCACATAAGATCTCTCCAAAATCGGCTCAAGCTCTGGCTATGCTCAGTGGTAAAGCTGCTGATGAGGTGAATGGAGTGGATGAACTGATAACCATATCCGATGATGAGGCTCGTAGCCATAGTGGATCAACATTAAAGTTACATGGTGAAAATAATGATACTGAAAAATATAAAATCCATCGTCTAGTTCTAGTTGAGGATGTGGACATCCTTTTTGCCGAAGATCGTGGATGTATTGCTGCCATACAACAGATTGCTGAGACATCAAAGGGGCCAATTATATTGACCAGTAATAGTGATAATCCTGGTCTGCGACATAAGTTTGACATGCTCCATGTTCCATTCGTGTTGCCATCACCAAAGGAATTGCTTTGCCATTTGTACAGTGTTTGTCTCACTGAAGGAGTCAACATCCATCCTCTTTTACTAGAGAAGTTTATACATTCTTGTGATGGAGATATCCGAAAAATCATTATGCATCTTCAATTCTGGTTTCAGAGTAAAATATTTAAAAAAGATGAAAAGGCACAGACAGGTTACGGCTCACTTCCATTTGATCTTGAGCTTGCCCATGAGATTCTTCCGAAGATGATGCCCTGGGATTTCCCCTCAGTGATTTCCGATCTAATTGAGAACAAAATAGCTAAACAAATAAATATAATGGAAGAAAACTCCAAAGAGTTGGTTACAGAAAAGCTTCACATAAGTGAACGGCATAAAGATTTAAATGTGAATTATACGGAGACTGATGATATAGAGGCCATGAAGGCGGAGATGATTAATAGGAATGGATTGTTGACGGATTACTTTGAGCTTGAAATTCAACGTAGCACTATTTCTGAGTTTTCCAATTCATCTGGTTCCCCACTTGCATCCTCTAGGCATGGTCGAAGGAAACTTGTAGTCATGTCCTCTGACTCTGAGGATGACAATTCAAATTGTGGATATCCTGTAGACTCCCACGATGAAGCTAATACGAGGCAACTGATGAAAGAAAATAATGGTTGTCCATCAGAATTTCTATTAAATGGAAACTACCCGGACACATCAGTCGATAGACTAGTTTGTTCCGATTTGGAGCACTCAGAGGACGAAGATTTTAAATATTTAGAAATGGCTGATGGTGCATACTTGAATGAAACATGTAAATCACTAGATGTATCATGTGTGCCAGAATCAACGTTTGTTCCTGAAACTGAAATTGAAAACGGAACAGAGACATTGTCTGGAGCAGTGTCTTCTGGTCCTGCTCTCCCTTTTGTTAGTCTTCCAGAAGTATCTGTAAATAATGAGTTGAAACCATTCAATTTCAATGTTCGTAGGCGCTTAACAAAATTGTCACAGAATCCAGATTTGTTGGCGGATACTGAAATTCCAGATCATTCTTTTCAAGGGGTTCTACCTGATGTTCAAGATGAACATACGGAGACACTTGTTAAAGTGATGGATGAATGCAGTCGAATGGATTTCAAACCAAAGCCAACATTGTGGCAGTCCAATCCATTAGACGAGACAGAAAAGATACAAAACGTGTGGAGAGATCTCCGTGATTGCCGAGTCGATTTAAGACAGCATTCTATCTCAGAAGAGCTTGGTGTTCTTCATGTTGTTAAACTTGCTAGTGGACTGTGCAATCTAATTTCAGATGCTGACTTGTTTCCTAAATGGGATAGAATGGAACCTTCAATGTTCCTTTCTAACGAAGCTGCATCACATGATTATTGTGAACAAATGATGTCCACTGTGGCTGAGCATGGGTTTTGCTTTTACGCTAAGCTTATAGCAGATGAAGGATCAAAGTTGGGTTGTGCAAATTGTGCTGATATTACTTCTGAGATGTTGGCTTCCTCCACTGATATTATGGCATTGGGGAAATTATCCCGACATGATCTCTCGAAAATGAAGGCTTTCCGTAATGGAAATGAAGTAGAGTGGAAGACCCAAATAAATAATATGCAAAAGAGTGAAAAGAAAAGATCTCTAATCGAGGTCATCCAATCCATTGCTCCTCCAAAAACATCCTTGGCATTAAAAGGTTATGCATTCAACGAATATCTATCTTCACTACGCCATATTTCTAGGTCTGAAGCTTTCCGTATTTCACAAGTGGTCGAAAAGAAGAGAGGAGGAAGGGTACGGGGCGTTCACCATTACTTGAGCACAAATACCAAGTTGTCTCCAGAAGAAATATCTTTGGTGACCGATGGTGATCCCTATAGAAAAATTTCTTCCCAACATACAACATAG 3666 0.4081 MESTVMDCSPSSSAAPPRRSGRRKLVQSTLFPLKPPEPVEKKDKEDELDEDYSEAKNNKKRKRSKAKATPPIDEDYSEAENNKKRKMSKAKATPPKKGSSKRPTPKKKATANGTNGSTSKQVLANSDQVKAPVFDLFLEAKLAAEEDSRIYAGRQVHPFFSLWKEGKKVHDVNESGSNLPTTKSKHKRTTCGPIHVFENVKDDTSSVDWRNWTFMENITSMNYGQGSVNSSVLEGSVESLNFDKLHSFLNPSGISISQNALSPSNPSSLAEQSACLTCGNAELDTEVDESVTPTVQAGIFRKSKDTEPLNRFLQESMRSYYRSCLDLEECHLWTYKYKPTKAVEVCGNDESVNFLSDWLHRWHERQYKSRKDNTDTDKSGMQDVEDDDDDYKCSYSDCDSEDMNEKNSLKNVLLITGPIGSGKSSAVHACAKEQGFVILEFNSSHSTNGTAIRNLEHSLNSLGFKSQSGSTASSHKISPKSAQALAMLSGKAADEVNGVDELITISDDEARSHSGSTLKLHGENNDTEKYKIHRLVLVEDVDILFAEDRGCIAAIQQIAETSKGPIILTSNSDNPGLRHKFDMLHVPFVLPSPKELLCHLYSVCLTEGVNIHPLLLEKFIHSCDGDIRKIIMHLQFWFQSKIFKKDEKAQTGYGSLPFDLELAHEILPKMMPWDFPSVISDLIENKIAKQINIMEENSKELVTEKLHISERHKDLNVNYTETDDIEAMKAEMINRNGLLTDYFELEIQRSTISEFSNSSGSPLASSRHGRRKLVVMSSDSEDDNSNCGYPVDSHDEANTRQLMKENNGCPSEFLLNGNYPDTSVDRLVCSDLEHSEDEDFKYLEMADGAYLNETCKSLDVSCVPESTFVPETEIENGTETLSGAVSSGPALPFVSLPEVSVNNELKPFNFNVRRRLTKLSQNPDLLADTEIPDHSFQGVLPDVQDEHTETLVKVMDECSRMDFKPKPTLWQSNPLDETEKIQNVWRDLRDCRVDLRQHSISEELGVLHVVKLASGLCNLISDADLFPKWDRMEPSMFLSNEAASHDYCEQMMSTVAEHGFCFYAKLIADEGSKLGCANCADITSEMLASSTDIMALGKLSRHDLSKMKAFRNGNEVEWKTQINNMQKSEKKRSLIEVIQSIAPPKTSLALKGYAFNEYLSSLRHISRSEAFRISQVVEKKRGGRVRGVHHYLSTNTKLSPEEISLVTDGDPYRKISSQHTT* 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0794 1221 MobiDBLite consensus disorder prediction 88 104 - -
Vra5g0794 1221 Coils Coil 45 65 - -
Vra5g0794 1221 MobiDBLite consensus disorder prediction 67 87 - -
Vra5g0794 1221 Gene3D - 331 584 IPR027417 -
Vra5g0794 1221 PANTHER CHECKPOINT PROTEIN RAD17/RAD24-RELATED 102 1220 - -
Vra5g0794 1221 MobiDBLite consensus disorder prediction 1 16 - -
Vra5g0794 1221 MobiDBLite consensus disorder prediction 105 122 - -
Vra5g0794 1221 CDD AAA 405 458 - -
Vra5g0794 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 331 667 IPR027417 -
Vra5g0794 1221 MobiDBLite consensus disorder prediction 36 58 - -
Vra5g0794 1221 MobiDBLite consensus disorder prediction 369 388 - -
Vra5g0794 1221 MobiDBLite consensus disorder prediction 1 122 - -
Vra5g0794 1221 Gene3D - 591 653 - -
Vra5g0794 1221 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 102 1220 IPR004582 GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0794 Vra-Chr5 13541102 13550952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0794 333 636 Core DNA Replication Machinery Family AT5G22010 23.529 3.87e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0794 - - var:108330450 1679.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0794 5 13541102 13550952 Vra5g0794 5 13541102 13550952 ECH